View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_53 (Length: 322)
Name: NF7636_low_53
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_53 |
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| [»] chr3 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 40569221 - 40568900
Alignment:
| Q |
1 |
tcaatgagatggacatcaggtttaagctatatgattcagaagaattaatgccacttccaccaacaacatcttcaacgtttttaatggaccgtgctgtttt |
100 |
Q |
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||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40569221 |
tcaatgacatcgaaatctggtttaagctatatgattcagaagaattaatgccacttccaccaacaacatcttcaacgtttttaatggaccgtgctgtttt |
40569122 |
T |
|
| Q |
101 |
aagcaacttttcagtctcttctgaagataaattgtcgcttccccaacgacgctcttcactaactaatattccctctaattccattgccacttctttcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40569121 |
aagcaacttttcagtctcttctgaagataaattgtcgcttccccaacgacgctcttcactaactaatattccctctaattccattgccacttctttcatg |
40569022 |
T |
|
| Q |
201 |
gtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40569021 |
gtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaa |
40568922 |
T |
|
| Q |
301 |
tatgaagtaaccgaccctcttt |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
40568921 |
tatgaagtaaccgaccctcttt |
40568900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 40573822 - 40573505
Alignment:
| Q |
1 |
tcaatgagatggacatcaggtttaagctatatgattcagaagaattaatgccacttccaccaacaacatcttcaacgtttttaatggaccgtgctgtttt |
100 |
Q |
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| T |
40573822 |
tcaatgacatcgaaatctggtttaagctataggattcataagaattaatgccacttccaccaacgacatcttcaatgtttttaatagaccgtgctgtttt |
40573723 |
T |
|
| Q |
101 |
aagcaacttttcagtctcttctgaagataaattgtcgcttccccaacgacgctcttcactaactaatattccctctaattccattgccacttctttcatg |
200 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
40573722 |
aagcaagttttcagcctcttctgaagataaattgtcgcttccccaacgtcgctcttcaacaactaatattccctcaagttccattgccacttctttcatg |
40573623 |
T |
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| Q |
201 |
gtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaa |
300 |
Q |
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| T |
40573622 |
gttggtctgtcctcgcccttcacccttaaacaccgttctgcaatatgggcaacctcttttagttgctcaatatttgcctcatctatatttttgtccaaaa |
40573523 |
T |
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| Q |
301 |
tatgaagtaaccgaccct |
318 |
Q |
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|||||||||||||||||| |
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| T |
40573522 |
tatgaagtaaccgaccct |
40573505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 40580261 - 40579962
Alignment:
| Q |
19 |
ggtttaagctatatgattcagaagaattaatgccacttccaccaacaacatcttcaacgtttttaatggaccgtgctgttttaagcaacttttcagtctc |
118 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||| | |||||| ||| ||||| | ||| ||||||||| ||||| ||||||||||| |
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| T |
40580261 |
ggtttaagctatatgaaccagaagaattaatatcacttccaccaataccatcttgaacattttttacggattctgctgttttgagcaagttttcagtctc |
40580162 |
T |
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| Q |
119 |
ttctgaagataaattgtcgcttccccaacgacgctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcaccc |
218 |
Q |
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||||||||| |||| ||| ||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||| || ||||||||||| ||| |
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| T |
40580161 |
ttctgaagacaaatagtcacttccccaacggaactcttcaataactaatattccctcaagttccattgccacttctttcatagttggtctgtcctctccc |
40580062 |
T |
|
| Q |
219 |
ttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccct |
318 |
Q |
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||||||||||||||||||||| ||||| |||||||| || ||||||||||||| | | ||||||| |||||||||||||||||||||||||||||| |
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| T |
40580061 |
ttcacccttaaacaccgttctgcaatatcggcaacctctttaagttgctcaatatttgtctcatctatatttttgtccaaaatatgaagtaaccgaccct |
40579962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 310
Target Start/End: Complemental strand, 40598578 - 40598420
Alignment:
| Q |
152 |
ctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagca |
251 |
Q |
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||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||| |||| || ||| |
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| T |
40598578 |
ctcttcagtaactaatattccctctagtcccattgccacttctttcatggttggtctttcctcactcttcacccttaaacacctttctgcaattagggca |
40598479 |
T |
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| Q |
252 |
acctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaa |
310 |
Q |
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| T |
40598478 |
acttcctttagatgttcaatatttttctcatctatatttttgtctagaatatgaagtaa |
40598420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 152 - 270
Target Start/End: Complemental strand, 40591976 - 40591858
Alignment:
| Q |
152 |
ctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagca |
251 |
Q |
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||||||| ||||||||||||| || | ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||| |||| || ||| |
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| T |
40591976 |
ctcttcaataactaatattccttccagttccattgccacttctttcatggatggtctttcctcactgttcacccttaaacacctttctgcaattagggca |
40591877 |
T |
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| Q |
252 |
acctcctttagttgctcaa |
270 |
Q |
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| T |
40591876 |
acttcctttagatgctcaa |
40591858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 40602627 - 40602516
Alignment:
| Q |
151 |
gctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgttctacaataagagc |
250 |
Q |
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|||||||| |||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||||| |||| | ||||||||| |||| |||| | || |
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| T |
40602627 |
gctcttcaataactaatattccctctagttccactgccacttctttcatggtcggtctttcctcactgttcatctttaaacacctttctgcaattatggc |
40602528 |
T |
|
| Q |
251 |
aacctcctttag |
262 |
Q |
| |
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||| |||||||| |
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| T |
40602527 |
aacttcctttag |
40602516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 322
Target Start/End: Original strand, 2014652 - 2014836
Alignment:
| Q |
138 |
cttccccaacgacgctcttcactaactaatattccctctaattccattgccacttctttcatggtgggtctgtcctcacccttcacccttaaacaccgtt |
237 |
Q |
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||||||||||| |||||||| |||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||| |||||||| || |
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| T |
2014652 |
cttccccaacggtgctcttcaataactaatattccctccagttccgctgccacttctttcatggtgggtctttcctcacccttcacccgtaaacaccttt |
2014751 |
T |
|
| Q |
238 |
ctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagtaaccgaccctcttt |
322 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||| | || | || ||| ||||||||||||||||||||||| |||| ||||| |
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| T |
2014752 |
ctgcaataagggcaacctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagtaactgaccatcttt |
2014836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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