View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_low_55 (Length: 314)

Name: NF7636_low_55
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_low_55
NF7636_low_55
[»] chr7 (1 HSPs)
chr7 (18-314)||(37448951-37449245)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 37449245 - 37448951
Alignment:
Q  18 tcaattagggtcatatccaaaagaaaatcatcgactgactagtgaactttgacgctcaaattatacagacccaaactgagacatacatataatttaagct 117  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37449245 tcaattagggtcatatccaaaagaaaatcatcgagtgactggtgaactttgacgctcaaattatacagacccaaactgagacatacatataatttaagct 37449146  T
Q  118 tattttatttgaaactggcttatagcttataggcaattcaagaagaagttgatnnnnnnnnnnnttataccgccaggactgaatcagaacacatctttga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  37449145 tattttatttgaaactggcttatagcttataggcaattcaagaagaagttgat--aaaaaaaaattataccgccaggactgaatcagaacacatctttga 37449048  T
Q  218 ttagtcaattatattcaaaccaaatgcatgtggtcaaattactctgcagatagacaaaacaataagatagtgttatattaattgactgcataatatt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37449047 ttagtcaattatattcaaaccaaatgcatgtggtcaaattactctgcagatagacaaaacaataagatagtgttatattaattgactgcataatatt 37448951  T

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