View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_58 (Length: 297)
Name: NF7636_low_58
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34289483 - 34289250
Alignment:
| Q |
1 |
caataatacaaatgacccctcgatttgatttttgctaaaatttaatgcattggtatttatatttttatataagaaaaaattatattaaagtgctaacatt |
100 |
Q |
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| T |
34289483 |
caataatacaaatgacccctcgatttgatttttgctaaaatttaatgcattggtatttatatttttatataagaaaaaattatattaaagtgccaacatt |
34289384 |
T |
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| Q |
101 |
acattggtttgagtgtaacaaacttgaatttcttataaaaagtcttaagttcggatcttgcgaatggagaaaatgtcgtttcgaaactcggtgttgaatt |
200 |
Q |
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| T |
34289383 |
acattggtttgagtgtaacaaacttaaatttcttataaaaagtcttaagttcgaatcttgcgaatggagaaaatgtcgtttggagagtctgtgttgaatt |
34289284 |
T |
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| Q |
201 |
aggttagtgttataattaaggtctgtaatactaa |
234 |
Q |
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| T |
34289283 |
aagttagtgttataattaaggtctgtaacactaa |
34289250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 34301856 - 34301716
Alignment:
| Q |
14 |
gacccctcgatttgatttttgctaaaattta---atgcattggtatttatatttttatataagaaaaaattatattaaagtgctaacattacattggttt |
110 |
Q |
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| T |
34301856 |
gacccttcaatttgatttttactaagatttatttatgcattcgtatttatatttttatataagaaaaa-ttatagtgaaatggcaacattgcattggttt |
34301758 |
T |
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| Q |
111 |
gagtgtaacaaacttgaatttcttataaaaagtcttaagttc |
152 |
Q |
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| T |
34301757 |
gcgtgtaacaagcttgaatcgcttaagaaaagtcttaagttc |
34301716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 34289252 - 34289212
Alignment:
| Q |
252 |
taattctccttccaatccctcatgtaattattcttctcact |
292 |
Q |
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| T |
34289252 |
taattctccttcaaatccctcatgtaattattcttttcact |
34289212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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