View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_68 (Length: 264)
Name: NF7636_low_68
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 6156325 - 6156074
Alignment:
| Q |
1 |
tcatgttgaaaccagagtgatgggtactgaaggctactgtgcaccagaatatgcgaagactggcaaattaactcgacaatctgatatctatagttttggt |
100 |
Q |
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| T |
6156325 |
tcatgttgaaaccagagtgatgggtactgaaggctactgtgcaccagaatatgcgaagactggcaaattaacccgacaatctgatatctatagttttggt |
6156226 |
T |
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| Q |
101 |
atggttttgctagagttgatcactggacgtagagcactagataatcgtagaagagcaggagagcgacacttaatgtcatgggtaaaaatttagtttgtat |
200 |
Q |
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| T |
6156225 |
atggttttgctagagttgatcactggacgtagagcactagataatcgtagaagagcaggagagcgacacttaatgtcatgggtaaaaatttagtttgtat |
6156126 |
T |
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| Q |
201 |
atatgtcttaccatttgcatgttggtgattccttttaaattcatcatatatt |
252 |
Q |
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| T |
6156125 |
atatgtcttgccatttgcatgttggtgatcccttttaaattcatcatatatt |
6156074 |
T |
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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 56020617 - 56020430
Alignment:
| Q |
10 |
aaccagagtgatgggtactgaaggctactgtgcaccagaatatgcgaagactggcaaattaactcgacaatctgatatctatagttttggtatggttttg |
109 |
Q |
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| T |
56020617 |
aacccgagtgatgggtaccgaaggctattgcgcactagaatatgctatgactggcaaattaactaaacaatccgatatctacagttttggtgtggttttg |
56020518 |
T |
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| Q |
110 |
ctagagttgatcactggacgtagagcactagataatcgtagaagagcaggagagcgacacttaatgtcatgggtaaaaatttagtttg |
197 |
Q |
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| T |
56020517 |
ctggaactgataaccggacgtagagccctggatactagtagggaagcaggggagcaatacttagttgcatgggtaaatatttagtttg |
56020430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 54031988 - 54031801
Alignment:
| Q |
14 |
agagtgatgggtactgaaggctactgtgcaccagaatatgcgaagactggcaaattaactcgacaatctgatatctatagttttggtatggttttgctag |
113 |
Q |
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|||||||||||||| | |||||||| || ||||||||||||| || |||||||||||||| | ||||||||||| || |||||| |||||||| | | |
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| T |
54031988 |
agagtgatgggtacatatggctactgcgcgccagaatatgcgatgagtggcaaattaactcttaagtctgatatctacagctttggtgtggttttgttgg |
54031889 |
T |
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| Q |
114 |
agttgatcactggacgtagagcactagataatcgtagaagagcaggagagcgacacttaatgtcatgggtaaaaatttagtttgtata |
201 |
Q |
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| T |
54031888 |
agttgattactggacgaagggcaatagatgctagtaaaaaaccaggagagcaaaacttagtttcatgggtaaatatttagttcgtata |
54031801 |
T |
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