View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_7 (Length: 600)
Name: NF7636_low_7
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 70 - 584
Target Start/End: Original strand, 11713635 - 11714143
Alignment:
| Q |
70 |
atcacttgtttagaagataaaaaactatttgtgtgggacttcaacttttcaaatactaccaggactcaattaataaaacccttcccacataattcaaatt |
169 |
Q |
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| T |
11713635 |
atcacttgtttaaaagataaaaaactatttgtgtgggactttaaattttcaaatactaccaggactcaattaataaaacccttcccacataattcaattt |
11713734 |
T |
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| Q |
170 |
ttaaaacataaataaagaagaatgaagttgccaactctgttctttattgatgtagcaatctaaatttacaaaatgtagttaaaggattctttacttaacn |
269 |
Q |
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| T |
11713735 |
ttaaaacataaataaagaagaatgaagttgccaactctgttctttattgatgtagcaatctaaatttacaaaatgtagttaaaggattctttacttaaca |
11713834 |
T |
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| Q |
270 |
nnnnnnnttctcttccaattaaannnnnnnncaattacactttaacatgcttcatttgttccagtaagactaattattaattaaaatgacatgcatgttt |
369 |
Q |
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| T |
11713835 |
aaaaaaatactcttccaattaagaaatttttcaattacactttaacatgcttcatttgttccagtaagactgattattaattaaaatgacatgcatgttt |
11713934 |
T |
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| Q |
370 |
gcttgagtgtatgtannnnnnnnnnnnnnnnaactatatctacatctacaacaaatgccactataactctttattcattgcccttgtcttcacttgccct |
469 |
Q |
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| T |
11713935 |
gcttgagtgtatgt------gtgtgtgtgtgaactatatctacatctacaacaaatgccactataactctttattcattgcccttgtcttcacttgccct |
11714028 |
T |
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| Q |
470 |
attaaattctccttttcctgtagaaattgatgaagagtttgagttgtataaggagaaggcattgtgcatggaggagtatcacttggtgaaatcaccatgc |
569 |
Q |
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| T |
11714029 |
attaaattctccttttcctgtagaaattgatgaagagtttgagttgtataaggagaaggcattgtgcatggaggagtatcacttggtgaaatcaccatgc |
11714128 |
T |
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| Q |
570 |
cctcaaccatgaaat |
584 |
Q |
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| T |
11714129 |
cctcaaccatgaaat |
11714143 |
T |
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