View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_73 (Length: 252)
Name: NF7636_low_73
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_73 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (2 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 1769 - 2007
Alignment:
| Q |
13 |
aatataatcctctcaacaaatgcacttctatataataaaaagaaaatgctaaagtgtacaacacatctctcgtgcaaatcccagaaatgagtgctactct |
112 |
Q |
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| T |
1769 |
aatataatcctctcaacaaatgcacttctatataataaaaagaaaatgctaaagtgtacaacacatctctcgtgcaaatcccagaaatgagtgctactct |
1868 |
T |
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| Q |
113 |
cttgaattttaannnnnnnnnncttcaaaattttaaccatgctatatctttaagataacaatttacatgaatttgttactattattgactctgatggtag |
212 |
Q |
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| T |
1869 |
cttgaattttaattttttttt-cttcaaaattttaaccatgctatatctttaagataacaatttacatgaatttgttactattattgactctgatggtag |
1967 |
T |
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| Q |
213 |
tactggaagtgtgatcttacatcacaacgctccatgtggt |
252 |
Q |
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| T |
1968 |
tactggaagtgtgatcttacatcacaacgctccatgtggt |
2007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 1809 - 1920
Alignment:
| Q |
13 |
aatataatcctctcaacaaatgcacttctatataataaaaagaaaatgctaaagtgtacaacacatctctcgtgcaaatcccagaaatgagtgctactct |
112 |
Q |
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| T |
1809 |
aatataatcctctcaacaaatgcacttctatataataaaaagaaaatgctaaagtgtacaacacatctctcgtgcaaatcccagaaatgagtgctactct |
1908 |
T |
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| Q |
113 |
cttgaattttaa |
124 |
Q |
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| T |
1909 |
cttgaattttaa |
1920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 1916 - 2007
Alignment:
| Q |
161 |
tttaagataacaatttacatgaatttgttactattattgactctgatggtagtactggaagtgtgatcttacatcacaacgctccatgtggt |
252 |
Q |
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| T |
1916 |
tttaagataacaatttacatgaatttgttactattattgactctgatggtagtactggaagtgtgatcttacatcacaacgctccatgtggt |
2007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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