View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_low_76 (Length: 248)

Name: NF7636_low_76

Description: NF7636

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7636_low_76

[»] chr3 (6 HSPs)

Alignment Details

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 6)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 195; E-Value: 1e-106

Query Start/End: Original strand, 21 - 248

Target Start/End: Complemental strand, 28901715 - 28901488

Alignment:

Q	21	acagtaccgatactattgtattctcatttttcttggtctcatttctaaaatcttgtttttgcttcatgatttcgtatattcttttatgtataagaggatc	120	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28901715	acagtactgatactattgtattctcatttttcttggtctcatttctaaaatcttgtttttgcttcatgatttcgtatattcttttatgtataagaggatc	28901616	T

Q	121	atatatgacattttgatagcaatttgctttaattggtagaaaagaatattgcacatgacgaagtcatacattgctgcagaacgaagtcaacatgagtgac	220	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28901615	atatatgacattttgatagcaatttgctttaattggtagaaaagaatattgcacatgacgaagtcatacattgctgcagaacgaggtcaacatgagtgac	28901516	T

Q	221	cnnnnnnncgcaatcataattttcttat	248	Q
		\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28901515	ctttttttcccaatcataattttcttat	28901488	T

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Target: chr3; HSP #2

Raw Score: 133; E-Value: 3e-69

Query Start/End: Original strand, 21 - 221

Target Start/End: Complemental strand, 28925343 - 28925143

Alignment:

Q	21	acagtaccgatactattgtattctcatttttcttggtctcatttctaaaatcttgtttttgcttcatgatttcgtatattcttttatgtataagaggatc	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|
T	28925343	acagtaccgatactatcatattctcatttttcttggtcttatttctaaaatcttgtttttgcttcatgattaaatgtattattttaagtagaagaggatc	28925244	T

Q	121	atatatgacattttgatagcaatttgctttaattggtagaaaagaatattgcacatgacgaagtcatacattgctgcagaacgaagtcaacatgagtgac	220	Q
		\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28925243	atacatgtaattttgatagcaatttgctttaattggtacaaaagaatattgcacacgactaagtcatacattgctgcagaaggaagtcaacatgagtgac	28925144	T

Q	221	c	221	Q
		\|
T	28925143	c	28925143	T

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Target: chr3; HSP #3

Raw Score: 46; E-Value: 2e-17

Query Start/End: Original strand, 112 - 193

Target Start/End: Complemental strand, 28916119 - 28916039

Alignment:

Q	112	aagaggatcatatatgacattttgatagcaatttgctttaattggtagaaaagaatattgcacatgacgaagtcatacattg	193	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	28916119	aagaggatcatacatgtaattttgat-gcaatttgctttaatttgtagaaaataatattgcacatgactaagtcgtacattg	28916039	T

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Target: chr3; HSP #4

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 78 - 192

Target Start/End: Complemental strand, 28891253 - 28891138

Alignment:

Q	78	tttgcttcatgatttcgtatattcttttatgtataagaggatcatatatgacattttgatagcaatttgctttaattggtag-aaaagaatattgcacat	176	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \| \|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	28891253	tttgcttcatgattttatatattcttttacgtagacgtggttcatacgtgtaattttgacagctatttgctttaattggtagaaaaagaatattgctcat	28891154	T

Q	177	gacgaagtcatacatt	192	Q
		\|\| \|\|\| \|\|\|\|\|\|\|\|
T	28891153	aaccaagccatacatt	28891138	T

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Target: chr3; HSP #5

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 161 - 221

Target Start/End: Complemental strand, 28916014 - 28915954

Alignment:

Q	161	aaagaatattgcacatgacgaagtcatacattgctgcagaacgaagtcaacatgagtgacc	221	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28916014	aaagaatattgcacataactaagtcatacattgccacagaaggaattcaacatgagtgacc	28915954	T

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Target: chr3; HSP #6

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 77 - 121

Target Start/End: Complemental strand, 28934359 - 28934315

Alignment:

Q	77	ttttgcttcatgatttcgtatattcttttatgtataagaggatca	121	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|
T	28934359	ttttgcttcatgattttgtatattcttttaagtagaagtggatca	28934315	T

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