View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_77 (Length: 247)
Name: NF7636_low_77
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_77 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 16172710 - 16172481
Alignment:
| Q |
18 |
acttcttgatcaacgcatgacactccggtattggtccgcttgctaaggttactcaaactatcttgttcccgatcctctttatccatacatttttgtttct |
117 |
Q |
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| T |
16172710 |
acttcttgatcaacgcatgacactccggtatcggtccgcttgctaaggttactcaaactatcttgttcccgatcctctttatccatacatttttgtttct |
16172611 |
T |
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| Q |
118 |
tcctattaggaggatcatcaatctttggattctgaagtattggcaccttttgatcatttgacgaagaagtagcaccgcgtggagccttgtccttcaagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16172610 |
tcctattaggaggatcatcaatctttggattctgaagtattggcaccttttgatcatttgacgaagaagtagcaccgcgtggagccttgtccttcaagaa |
16172511 |
T |
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| Q |
218 |
aacttttggaatcgacaaattttcactgtc |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16172510 |
aacttttggaatcgacaaattttcactgtc |
16172481 |
T |
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