View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_8 (Length: 561)
Name: NF7636_low_8
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 32674909 - 32675443
Alignment:
| Q |
16 |
tttccaagtcgcttctaacccttctctgagcagtaacaggtgcattacgagcctcggttatcattgattccctctccatttccacagacattttgattgt |
115 |
Q |
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| T |
32674909 |
tttccaagtcgcttctaacccttctctgagcagtaacaggggcattacgagcctcggttatcattgattccctctccatttccacagacattttgattgt |
32675008 |
T |
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| Q |
116 |
ttctcttttgagttaattaagcttgctcaatatgatat--tcacctaattttcacttcatggtttttgtagggaaacaacnnnnnnnnnnnnnnnctttg |
213 |
Q |
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| T |
32675009 |
ttctcttttgagttaattaagcttgctcaatatgatatattcccctaattttcacttcatggtttt-gtagggaaacaactatatattatatatactttg |
32675107 |
T |
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| Q |
214 |
gttgaggtatgaataaaaggtgaggggtgtaaagagaaaaatagatggagaaagtagaaagagccagcgatgaaccacatgttacgtgacgtacatgcat |
313 |
Q |
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| T |
32675108 |
gttgaggtatgaataaaaggtgaggggtgtaaagagaaaaatagatggagaaagtagaaagagccagcgatgaaccacatgttacgtggcgtacatgcat |
32675207 |
T |
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| Q |
314 |
gagtttgcaaggttatattgtgtcaagttaggaggtgatacttgtcctctgctgatttacaccaatatatgtcaaatggagtgcaaaattgaggtcaaaa |
413 |
Q |
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| T |
32675208 |
gagtttgcaaggttatattgtgtcaagttaggaggtgatacttgtcctctgctgatttacaccaatatatgtcaaatggagtgcaaaattgaggtcaaaa |
32675307 |
T |
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| Q |
414 |
gattattcgaaagtagtcaatagaagaagcaaataaactagtgttgttgaagacacgaagacgtggaggtttaactttgtcaatatatgttcttaattgg |
513 |
Q |
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| T |
32675308 |
gattattcgaaagtagtcaatagaagaagcaaataaactagtgttgttgaagacacgaagacgtggaggtttaactttgtcaatatatgttcttaattgg |
32675407 |
T |
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| Q |
514 |
acacctatttttagtgggttttataagtttaatatt |
549 |
Q |
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| T |
32675408 |
acacctatttttagtgggttttataagtttaatatt |
32675443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 8969975 - 8970032
Alignment:
| Q |
489 |
tttgtcaatatatgttcttaattggacacctatttttagtgggttttataagtttaat |
546 |
Q |
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| T |
8969975 |
tttgtcaatatgtgatgttcattggacacctctttttagtggtttttataagtttaat |
8970032 |
T |
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