View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_84 (Length: 239)
Name: NF7636_low_84
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_84 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37438300 - 37438078
Alignment:
| Q |
1 |
atgcatacttttcatcttgttacccttgtcacaaagaatcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgat |
100 |
Q |
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| T |
37438300 |
atgcatacttttcatcttgttacccttgtcacaaagaatcttcagaaagaaagtttgagtcaaaaaattgggacaaataacttcatttcattgatttgat |
37438201 |
T |
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| Q |
101 |
tagatgttatgatctcctgatgaaactaagcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctggt |
200 |
Q |
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| T |
37438200 |
tagatgttatgatctcccgatgaaactaagcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctagt |
37438101 |
T |
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| Q |
201 |
ataagctttgagaaaattcataa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
37438100 |
ataagctttgagaaaattcataa |
37438078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 115662 - 115452
Alignment:
| Q |
13 |
catcttgttacccttgtcacaaagaatcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatga |
112 |
Q |
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| T |
115662 |
catcttgttacccgcatcacaaggaatcttcagaaagaaagtttgaggcaaagaaatgggagaaatcacgtcatttcactgatttgattagatattccta |
115563 |
T |
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| Q |
113 |
tctcctgatgaaactaagcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctggtataagctttgag |
212 |
Q |
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| T |
115562 |
tctccctatgaaactaaaaaatcagtataatgattttcacaaagaatgtttgatggtaaggactgcaacaaagttgaatgaagctggtataagctttgag |
115463 |
T |
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| Q |
213 |
aaaattcataa |
223 |
Q |
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| T |
115462 |
aaggttcataa |
115452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 606815 - 607026
Alignment:
| Q |
13 |
catcttgttacccttgtcacaaagaatcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatga |
112 |
Q |
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| T |
606815 |
catcttgttaccctcatcacaaggagtcatcagaaagaatgtttgaggaaaaaaattgggagaaatcactccatttcaccgatttgattagatattcata |
606914 |
T |
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| Q |
113 |
tctcctgatgaaactaagcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctggtataagctttgag |
212 |
Q |
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| T |
606915 |
tctcccaatgaaactaagcgatcaatatatggattctcaaaatgagtgtttgatgtcaaggactgcaacaaagttgaatgaagctggcataagcctcgag |
607014 |
T |
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| Q |
213 |
aaaattcataat |
224 |
Q |
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||| || ||||| |
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| T |
607015 |
aaagtttataat |
607026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 178153 - 178338
Alignment:
| Q |
38 |
atcttcggaaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaactaagcaatcaa |
137 |
Q |
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|||||| ||||| | ||||| |||||| || ||||| |||| |||| ||||||||||||| ||||||||| | |||||| |||||| | |||| | | |
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| T |
178153 |
atcttcagaaagtatgtttgggtcaaagaagtgggagaaatcacttcatttcattgatttaattagatgtgcttatctccccatgaaaattagcactaag |
178252 |
T |
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| Q |
138 |
aatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctggtataagctttgagaaaattcataa |
223 |
Q |
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| T |
178253 |
aactctgattctcataaagagtgtttgatgttaaggagtgcaacaaagttgaatgaagctggtataagctttgagaaggttcataa |
178338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 10021 - 9884
Alignment:
| Q |
46 |
aaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaactaagcaatcaaaatattga |
145 |
Q |
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|||||| ||||||| |||||||||||| |||| | || |||| | |||||||||||| | || | |||||| ||||| |||||||||||| ||||||| |
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| T |
10021 |
aaagaatgtttgaggaaaaaaattgggagaaatcatttcattttactgatttgattaggtcttcttatctcccaatgaagctaagcaatcaacatattga |
9922 |
T |
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| Q |
146 |
ttctcaaaaagagtgtttgatgttaaggactccaacaa |
183 |
Q |
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| T |
9921 |
ttctcaaagaaaatgtttgaagccaaggactgcaacaa |
9884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 23475 - 23338
Alignment:
| Q |
46 |
aaagaaagtttgagtcaaaaaattgggacaaataacttgatttcattgatttgattagatgttatgatctcctgatgaaactaagcaatcaaaatattga |
145 |
Q |
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|||||| ||||||| |||||||||||| |||| | || |||| | |||||||||||| | || | |||||| ||||| |||||||||||| ||||||| |
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| T |
23475 |
aaagaatgtttgaggaaaaaaattgggagaaatcatttcattttactgatttgattaggtcttcttatctcccaatgaagctaagcaatcaacatattga |
23376 |
T |
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| Q |
146 |
ttctcaaaaagagtgtttgatgttaaggactccaacaa |
183 |
Q |
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|||||||| | | ||||||| | ||||||| |||||| |
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| T |
23375 |
ttctcaaagaaaatgtttgaagccaaggactgcaacaa |
23338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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