View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_90 (Length: 218)
Name: NF7636_low_90
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_90 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 27865 - 28048
Alignment:
| Q |
19 |
aaccgcgctgaccaatgaactctatatgttccatttatgtgaagaaataagctaattgttgatgacacctaaaattataacagaatatgaggaaaccata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27865 |
aaccgcgctgaccaatgaactctatatgttccatttatgtgaagaaataagctaattgttgatgacacctaaaattataacagaatatgaggaaaccata |
27964 |
T |
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| Q |
119 |
caacaaggcattacagaaagatactcaatcacaatcttaagccagaaaaacctcaaagggtgaaactggcccgttccagccaca |
202 |
Q |
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| T |
27965 |
caacaaggcattacagaaagatactcaatcacaatcttaagccagaaaaacctcaaagggtgaaactggcccgttccagccaca |
28048 |
T |
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Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 10434389 - 10434206
Alignment:
| Q |
19 |
aaccgcgctgaccaatgaactctatatgttccatttatgtgaagaaataagctaattgttgatgacacctaaaattataacagaatatgaggaaaccata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10434389 |
aaccgcgctgaccaatgaactctatatgttccatttatgtgaagaaataagctaattgttgatgacacctaaaattataacagaatatgaggaaaccata |
10434290 |
T |
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| Q |
119 |
caacaaggcattacagaaagatactcaatcacaatcttaagccagaaaaacctcaaagggtgaaactggcccgttccagccaca |
202 |
Q |
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| T |
10434289 |
caacaaggcattacagaaagatactcaatcacaatcttaagccagaaaaacctcaaagggtgaaactggcccgttccagccaca |
10434206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 37572586 - 37572499
Alignment:
| Q |
30 |
ccaatgaactctatatgttccatttatgtgaagaaataagctaattgttgatgacacctaaaattataacagaatatgaggaaaccat |
117 |
Q |
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||||||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||| |||||| |||| ||||||| |
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| T |
37572586 |
ccaatgagctctatatgttccatttatgtgaagaagtaaactaactgttgatgacacctaaaaatatagcagaatttgagaaaaccat |
37572499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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