View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7637_high_3 (Length: 239)
Name: NF7637_high_3
Description: NF7637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7637_high_3 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 25920079 - 25920300
Alignment:
| Q |
18 |
tgaacaagctccaacagaacctgaagcaacagactctgtaggtgaaaaagaagttactgcagaagaagaaataccaccagagtctgaaagagttgatatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25920079 |
tgaacaagctccaacagaacctgaagcaatagactctgtaggtgaaaaagaagttactgcagaagaagaaataccaccagagtctgagagagttgatatt |
25920178 |
T |
|
| Q |
118 |
gtacttttgcatgaagcatctcagcttctagctgaaagtctgaagaatagagaacatgcaattactacttgatgcccactttcgtgtttaattcgattag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25920179 |
gtacttttgcatgaagcatctcagcttctagatgaaagtctgaagaatagagaacctgcaattactacttgatgcacactttcgtgtttaattcgattag |
25920278 |
T |
|
| Q |
218 |
cgtagttacgcaatggtaagtt |
239 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
25920279 |
cgtagttacgaaatggcaagtt |
25920300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 17197821 - 17197872
Alignment:
| Q |
187 |
tgatgcccactttcgtgtttaattcgattagcgtagttacgcaatggtaagt |
238 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
17197821 |
tgatgcacactttcgtgtttaattcgattagcgtagttgtgcaatggcaagt |
17197872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 20549838 - 20549800
Alignment:
| Q |
200 |
cgtgtttaattcgattagcgtagttacgcaatggtaagt |
238 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20549838 |
cgtgtttaattcgattagcgtagttgcgcaatggtaagt |
20549800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 16523937 - 16523900
Alignment:
| Q |
187 |
tgatgcccactttcgtgtttaattcgattagcgtagtt |
224 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
16523937 |
tgatgcacactttcgtgtttaatttgattagcgtagtt |
16523900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 16917081 - 16917029
Alignment:
| Q |
186 |
ttgatgcccactttcgtgtttaattcgattagcgtagttacgcaatggtaagt |
238 |
Q |
| |
|
||||||| || ||| |||||||||||||||||||||||| || |||||||||| |
|
|
| T |
16917081 |
ttgatgcacatttttgtgtttaattcgattagcgtagttgcgaaatggtaagt |
16917029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 22067361 - 22067321
Alignment:
| Q |
198 |
ttcgtgtttaattcgattagcgtagttacgcaatggtaagt |
238 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
22067361 |
ttcgtgtttatttcgattagcgtagttgcgcaatggcaagt |
22067321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 17026472 - 17026428
Alignment:
| Q |
194 |
cactttcgtgtttaattcgattagcgtagttacgcaatggtaagt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| || | |||||| |||| |
|
|
| T |
17026472 |
cactttcgtgtttaattcgattagcgtattttcacaatggcaagt |
17026428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University