View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7637_low_1 (Length: 724)
Name: NF7637_low_1
Description: NF7637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7637_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 333 - 709
Target Start/End: Original strand, 37640193 - 37640569
Alignment:
| Q |
333 |
tgattacataaacacaaacaaccccatgcattgtcattcacctctgaacactctcactctctcacatttctctcgttttgtttgatggctatggccgttc |
432 |
Q |
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| T |
37640193 |
tgattacataaacacaaacaaccccatgcattgtcattcacctctgaacactctcactctctcacatttctctcgttttgtttgatggctatggccgttc |
37640292 |
T |
|
| Q |
433 |
ccgcccaaaccatcgccggctacgatcgtttcccatgggacgcgattcttctccaaaccaactcagctttgatgaacaacaccgatcctaacgtatgggc |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37640293 |
ccgcccaaaccatcgccggctacgatcgtttcccatgggacgcgattcttctccaaaccaactcagctttgatgaacaacaccgatcctaacgtatgggc |
37640392 |
T |
|
| Q |
533 |
gtcgcaaatcatctcaacactccgctctaccgccgtcactctcccttccgtcgacctcgctcaccgtttagtctctcatttgttctggaaccatcactct |
632 |
Q |
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|||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37640393 |
gtcgcaaatcatctcaacactccgttccaccgctgtcactctcccttccgtcgacctcgctcaccgtttagtctctcatttgttctggaaccatcactct |
37640492 |
T |
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| Q |
633 |
cccatcgcttggaagcttctagacattgctacttcactcaaccttcttcctccgttgctcctcgtcgctcttctctc |
709 |
Q |
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| T |
37640493 |
cccatcgcttggaagcttctagacattgctgcttcactcaaccttcttcctccgttgctcctcgtcgctcttctctc |
37640569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 37639849 - 37640165
Alignment:
| Q |
1 |
atgtcaataattcatcgacgacctcattctaatcatgaaagcaataagaaataatgtcaacgaacaatctctctcaaactttaccactcacaccctatac |
100 |
Q |
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| T |
37639849 |
atgtcaataattcatcgacgacctcattctagtcatgaaagcaacaggaaataatgtcaacgaacaatctctctctaactttaccactcacaccctgtac |
37639948 |
T |
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| Q |
101 |
ttaaacactcatatggagaatgttcatcatcttcctcagttcaagactcgaattcacattattttttagtcatattccaaaacgccatgaatattttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37639949 |
ttaaacactcatatggagaatgttcatcatcttcctcagttcaagactcgaatttacattattttttagccatattccaaaacgccatgaatattttaat |
37640048 |
T |
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| Q |
201 |
ctgaaactatcgcgacca-------------tagaagtggtggtgtagcaaacctttgtcacaacacaacaccatggtgtacatggattaaaatgtttga |
287 |
Q |
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| T |
37640049 |
ctgaaactattgcgaccagatgtaaaaatagtagaagtggtggtgtagcaaacctttggcacaacacaacaccatggtgtacatggattaaaatgtttga |
37640148 |
T |
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| Q |
288 |
ctctaattttttaatat |
304 |
Q |
| |
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||||||||||||||||| |
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| T |
37640149 |
ctctaattttttaatat |
37640165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 340 - 709
Target Start/End: Complemental strand, 2157140 - 2156771
Alignment:
| Q |
340 |
ataaacacaaacaaccccatgcattgtcattcacctctgaacactctcactctctcacatttctctcgttttgtttgatggctatggccgttcccgccca |
439 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2157140 |
ataagcacaaaca-ccccatgcattgtcattgacctctgaacactcttactctctcgcgtttctctcgttttgtttgatggctatgcccgttcccgccca |
2157042 |
T |
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| Q |
440 |
aaccatcgccggctacgatcgtttcccatgggacgcgattcttctccaaaccaactcagctttgatgaacaacac--cgatcctaacgtatgggcgtcgc |
537 |
Q |
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||| ||| ||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||||| | |||||||||||||||||||| |
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| T |
2157041 |
aact-tcgtcggtgacgatcgttttccatgggacgtgattcttcgccaaaccaactcagctttgctgaacaacacacctgtcctaacgtatgggcgtcgc |
2156943 |
T |
|
| Q |
538 |
aaatcatctcaacactccgctctaccgccgtcactctcccttccgtcgacctcgctcaccgtttagtctctcatttgttctggaaccatcactctcccat |
637 |
Q |
| |
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|||||| || | |||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2156942 |
aaatcacttccatactccgttcctccgccgtcactctcccttccgtcgacctcgctctccgtttagtctctcatttgttttggaaccatcactctcccac |
2156843 |
T |
|
| Q |
638 |
cgcttggaagcttctagacattgctacttcactcaaccttcttcctccgttgctcctcgtcgctcttctctc |
709 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
2156842 |
cgtttggaagcttctagacattgctacttcactcaaccttcttcctccgttactcctcatcgctcttctctc |
2156771 |
T |
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