View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7637_low_3 (Length: 263)
Name: NF7637_low_3
Description: NF7637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7637_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 23588692 - 23588466
Alignment:
| Q |
18 |
acttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588692 |
acttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgt |
23588593 |
T |
|
| Q |
118 |
cttgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacccgacaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23588592 |
cttgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacccgacaac |
23588493 |
T |
|
| Q |
218 |
tcaaacttgcccaacaaattgttatca |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
23588492 |
tcaaacttgcccaacaaattgttatca |
23588466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 23597542 - 23597318
Alignment:
| Q |
20 |
ttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtct |
119 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
23597542 |
ttgtacttttccgcttcctgcaccattttctcaatgtcctccttggagagcctacccttgtcattggtaattgtaatcttgtttttttgcccggttgtct |
23597443 |
T |
|
| Q |
120 |
tgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacccgacaactc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
23597442 |
tgtcctctgctgagacattcaaaatgccattggcatcgatgtcaaagcagacagtgatctgaggaacaccccttggagcaggaggaatacccgacagctc |
23597343 |
T |
|
| Q |
220 |
aaacttgcccaacaaattgttatca |
244 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
23597342 |
aaacttgcccaacaaattgttatca |
23597318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 54395654 - 54395824
Alignment:
| Q |
40 |
caccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtcttgtcctctgctgagacattc |
139 |
Q |
| |
|
|||||||||||| || ||||||||| | ||| ||||| ||||| ||||| || |||||||| ||| || | ||| || || || || || || ||| |
|
|
| T |
54395654 |
caccatcttctctatctcttccttgctcaacctccccttatcattcgtgatcgttatcttgttcttcactccagctgttttatcttcagcagaaacgttc |
54395753 |
T |
|
| Q |
140 |
aaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacc |
210 |
Q |
| |
|
|| || ||||| ||||||||||| || || ||| ||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
54395754 |
aatataccattcgcatcaatgtcgaaacaaacattgatctgtggtacacctcttggagcaggaggaatacc |
54395824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 39984855 - 39985077
Alignment:
| Q |
18 |
acttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgt |
117 |
Q |
| |
|
|||||||||| || || || || |||||||||||||| |||||||| || || |||||||||||||||||||| || || ||||| ||||| || ||||| |
|
|
| T |
39984855 |
acttgtacttctctgcctcttgaaccatcttctcaatgtcttcctttgaaagtctacccttgtcattggtgatggtgattttgttcttctggccagttgt |
39984954 |
T |
|
| Q |
118 |
cttgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacccgacaac |
217 |
Q |
| |
|
||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||| || |||||||| || || |||||||| || || || | |
|
|
| T |
39984955 |
tttgtcttctgcagagacattcaagataccattggcatcaatgtcaaagcacacagtgatttggggaacacctctgggggcaggaggaatgccggaaagt |
39985054 |
T |
|
| Q |
218 |
tcaaacttgcccaacaaattgtt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39985055 |
tcaaacttgcccaacaaattgtt |
39985077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 8018371 - 8018201
Alignment:
| Q |
19 |
cttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtc |
118 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||||||| || | |||||| |||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
8018371 |
cttgtatttttctgcttcctcaaccatcttctcaatttcttccttagacaacctacctttgtcattggtgatggtaatcttgttcttctgcccagttgtt |
8018272 |
T |
|
| Q |
119 |
ttgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacacc |
189 |
Q |
| |
|
|||||||| || ||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
8018271 |
ttgtcctcagcagagacattcaagataccattggcatcaatgtcgaagcaaactgtgatttgaggaacacc |
8018201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 8101877 - 8102101
Alignment:
| Q |
19 |
cttgtacttttcagcttcctgcaccatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaatcttgtttttctgccctgttgtc |
118 |
Q |
| |
|
|||||| || || ||||| || ||||||||||| ||||||||||| || | ||| ||||| || |||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
8101877 |
cttgtatttctctgcttcttggaccatcttctcgatttcttcctttgacaaccttcccttatcgttggtgatggtaatcttgttcttctgcccggttgtt |
8101976 |
T |
|
| Q |
119 |
ttgtcctctgctgagacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacccgacaact |
218 |
Q |
| |
|
|||||||| || ||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||| | || || ||||| || || || | || |
|
|
| T |
8101977 |
ttgtcctcagcagagacattcaagataccattggcatcaatatcaaaacaaacagtgatctgaggaacaccgcggggtgctggaggaattccggaaagct |
8102076 |
T |
|
| Q |
219 |
caaacttgcccaacaaattgttatc |
243 |
Q |
| |
|
||||||| |||||||| |||||||| |
|
|
| T |
8102077 |
caaacttacccaacaagttgttatc |
8102101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 17648773 - 17648662
Alignment:
| Q |
132 |
agacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacccgacaactcaaacttgcccaa |
231 |
Q |
| |
|
|||||| ||| || ||||| ||||||||||||||||| ||| ||||||| |||||||| || |||||||||||||| || || | | ||| || ||||| |
|
|
| T |
17648773 |
agacatccaatataccattagcatcaatgtcaaagcatacactgatctgtggaacacctctaggagcaggagggatgccggaaagttgaaattttcccaa |
17648674 |
T |
|
| Q |
232 |
caaattgttatc |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17648673 |
caaattgttatc |
17648662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 17706520 - 17706409
Alignment:
| Q |
132 |
agacattcaaaatgccattggcatcaatgtcaaagcagacagtgatctgaggaacaccccttggagcaggagggatacccgacaactcaaacttgcccaa |
231 |
Q |
| |
|
|||||||||| || ||||| | ||||||||||||||| ||| ||||||| |||||||||| |||||||||||||| || || | | ||| || ||||| |
|
|
| T |
17706520 |
agacattcaatataccattaggatcaatgtcaaagcatacaatgatctgtggaacaccccaaggagcaggagggatgccggaaagttgaaattttcccaa |
17706421 |
T |
|
| Q |
232 |
caaattgttatc |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17706420 |
caaattgttatc |
17706409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 17649253 - 17649198
Alignment:
| Q |
41 |
accatcttctcaatttcttccttggagagcctacccttgtcattggtgattgtaat |
96 |
Q |
| |
|
|||||||||||||| | |||||| || || |||||||||||||||||||| ||||| |
|
|
| T |
17649253 |
accatcttctcaatgttttcctttgaaagtctacccttgtcattggtgatggtaat |
17649198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University