View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7637_low_5 (Length: 227)
Name: NF7637_low_5
Description: NF7637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7637_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13034305 - 13034097
Alignment:
| Q |
1 |
aaaatcaataattattgtcatagtaataaatgaactgcagagatgaaatgactaatacacccttccctagagaagaactggtctatattctgaacatcac |
100 |
Q |
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| T |
13034305 |
aaaatcaataattattgtcatagtaataaatgaactgcagagatgaaatgactaatacacccttccctagagaagaactggtctatattctgaacatcac |
13034206 |
T |
|
| Q |
101 |
aatttcccacaccatattgtaataacacaattgccaacgaaatggagcccactaaaaacgaaccagatcataggtatcaaacttagttcagctacaactt |
200 |
Q |
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| T |
13034205 |
aatttcccacaccatattgtaataacacaattgccaacgaaatggagcccactaaaaacgaaccagatcataggtatcaaacttagttcagctacaactt |
13034106 |
T |
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| Q |
201 |
aatgctagt |
209 |
Q |
| |
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||||||||| |
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| T |
13034105 |
aatgctagt |
13034097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13104278 - 13104070
Alignment:
| Q |
1 |
aaaatcaataattattgtcatagtaataaatgaactgcagagatgaaatgactaatacacccttccctagagaagaactggtctatattctgaacatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13104278 |
aaaatcaataattattgtcatagtaataaatggactgcagagatgaaatgactaatacacccttccctagagaagaactggtctatattctgaacatcac |
13104179 |
T |
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| Q |
101 |
aatttcccacaccatattgtaataacacaattgccaacgaaatggagcccactaaaaacgaaccagatcataggtatcaaacttagttcagctacaactt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13104178 |
aatttcccacaccatattgtaataacacaattgccaacgaaatggagcccactaaaaacgaaccagatcataggtatcaaacttagttcagctacaactt |
13104079 |
T |
|
| Q |
201 |
aatgctagt |
209 |
Q |
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||||||||| |
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| T |
13104078 |
aatgctagt |
13104070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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