View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7637_low_6 (Length: 205)

Name: NF7637_low_6
Description: NF7637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7637_low_6
NF7637_low_6
[»] chr6 (7 HSPs)
chr6 (19-187)||(28027205-28027373)
chr6 (142-183)||(5631675-5631716)
chr6 (144-187)||(30031115-30031158)
chr6 (144-182)||(10100242-10100280)
chr6 (114-175)||(14030635-14030696)
chr6 (19-56)||(27926551-27926588)
chr6 (19-56)||(28087247-28087284)
[»] chr5 (1 HSPs)
chr5 (144-187)||(27753-27796)
[»] chr2 (2 HSPs)
chr2 (141-184)||(38429740-38429783)
chr2 (141-184)||(41763424-41763467)
[»] chr4 (2 HSPs)
chr4 (142-184)||(55578888-55578930)
chr4 (144-184)||(45205231-45205271)
[»] chr8 (5 HSPs)
chr8 (142-187)||(18125032-18125077)
chr8 (142-184)||(42854387-42854429)
chr8 (144-185)||(13172031-13172072)
chr8 (143-184)||(15215654-15215695)
chr8 (144-184)||(17492009-17492049)
[»] chr1 (5 HSPs)
chr1 (140-184)||(37463250-37463294)
chr1 (141-184)||(696125-696168)
chr1 (141-184)||(15085790-15085833)
chr1 (140-187)||(19936377-19936424)
chr1 (145-187)||(9592594-9592636)
[»] scaffold0570 (1 HSPs)
scaffold0570 (145-188)||(2649-2692)
[»] chr7 (5 HSPs)
chr7 (141-184)||(38606861-38606904)
chr7 (142-184)||(32630452-32630494)
chr7 (114-183)||(43281505-43281574)
chr7 (144-184)||(7189616-7189656)
chr7 (144-184)||(15681216-15681256)
[»] chr3 (2 HSPs)
chr3 (141-187)||(5168684-5168730)
chr3 (144-184)||(43308425-43308465)
[»] scaffold0024 (1 HSPs)
scaffold0024 (147-187)||(82583-82623)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 28027373 - 28027205
Alignment:
Q  19 tgtttaagattcaagacacatacacttttttcttcctaaaagtaaaaaagtaccgcttaagttaaaagtgaagttctgttggagtgtgttccaacaagtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28027373 tgtttaagattcaagacacatacacttttttcttcctaaaagtaaaaaagtaccgcttaagttaaaagtgaagttctgttggagtgtgttccaacaagtt 28027274  T
Q  119 ctatcgaacagcaggtaagcaagcaatgttgtatggtatggagtgttgggaggttaagaaccaacatga 187  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28027273 ctatcgaacagcaggtaagcaagcgatgttgtatggtatggagtgttgggaggttaagaaccaacatga 28027205  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 5631675 - 5631716
Alignment:
Q  142 caatgttgtatggtatggagtgttgggaggttaagaaccaac 183  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  5631675 caatgttgtatggtatggagtgttgggcggttaagagccaac 5631716  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 30031115 - 30031158
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaacatga 187  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||    
T  30031115 atgttgtatggtacggagtgttgggcggttaagagccaacatga 30031158  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 10100280 - 10100242
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaa 182  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  10100280 atgttgtatggtacggagtgttgggaggttaagagccaa 10100242  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 14030635 - 14030696
Alignment:
Q  114 aagttctatcgaacagcaggtaagcaagcaatgttgtatggtatggagtgttgggaggttaa 175  Q
    ||||||||||| ||| |||  || | ||||||||||||||||| ||||||||||| ||||||    
T  14030635 aagttctatcggacaacagtcaaactagcaatgttgtatggtacggagtgttgggcggttaa 14030696  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 27926551 - 27926588
Alignment:
Q  19 tgtttaagattcaagacacatacacttttttcttccta 56  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  27926551 tgtttaagattcaggacacatgcacttttttcttccta 27926588  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 28087284 - 28087247
Alignment:
Q  19 tgtttaagattcaagacacatacacttttttcttccta 56  Q
    |||||||||||||||||| || ||||||||||||||||    
T  28087284 tgtttaagattcaagacatatgcacttttttcttccta 28087247  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 27753 - 27796
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaacatga 187  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  27753 atgttgtatggtacggagtgttgggcggttaagaaccaacatga 27796  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 38429740 - 38429783
Alignment:
Q  141 gcaatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    |||||||||||||||| ||||||||||| |||||||||||||||    
T  38429740 gcaatgttgtatggtacggagtgttgggcggttaagaaccaaca 38429783  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 41763467 - 41763424
Alignment:
Q  141 gcaatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    ||||||||||||||||  |||||||||| |||||||||||||||    
T  41763467 gcaatgttgtatggtacagagtgttgggcggttaagaaccaaca 41763424  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 55578888 - 55578930
Alignment:
Q  142 caatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    ||||||||||||||||| ||||||||| |||||||||||||||    
T  55578888 caatgttgtatggtatgaagtgttgggcggttaagaaccaaca 55578930  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 45205271 - 45205231
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    ||||||||||||| |||||||||||  ||||||||||||||    
T  45205271 atgttgtatggtacggagtgttgggcagttaagaaccaaca 45205231  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 18125032 - 18125077
Alignment:
Q  142 caatgttgtatggtatggagtgttgggaggttaagaaccaacatga 187  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||    
T  18125032 caatgttgtatggtacggagtgttgggcggttaagagccaacatga 18125077  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 42854429 - 42854387
Alignment:
Q  142 caatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||    
T  42854429 caatgttgtatggtacggagtgttgggcggttaagagccaaca 42854387  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 13172072 - 13172031
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaacat 185  Q
    |||||||||||||  |||||||||| ||||||||||||||||    
T  13172072 atgttgtatggtacagagtgttgggcggttaagaaccaacat 13172031  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 15215695 - 15215654
Alignment:
Q  143 aatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    |||||||||||||| ||||||||||| |||||||| ||||||    
T  15215695 aatgttgtatggtacggagtgttgggcggttaagagccaaca 15215654  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 17492049 - 17492009
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    ||||||||||  ||||||||||||| |||||||||||||||    
T  17492049 atgttgtatgcaatggagtgttgggcggttaagaaccaaca 17492009  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 37463294 - 37463250
Alignment:
Q  140 agcaatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    |||||||||||||||||  |||||||||| |||||||||||||||    
T  37463294 agcaatgttgtatggtacagagtgttgggtggttaagaaccaaca 37463250  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 696125 - 696168
Alignment:
Q  141 gcaatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||    
T  696125 gcaatgttgtatggtacggagtgttgggtggttaagagccaaca 696168  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 15085790 - 15085833
Alignment:
Q  141 gcaatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||    
T  15085790 gcaatgttgtatggtacggagtgttgggcggttaagagccaaca 15085833  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 19936377 - 19936424
Alignment:
Q  140 agcaatgttgtatggtatggagtgttgggaggttaagaaccaacatga 187  Q
    ||||||||| || ||||| |||||||||| ||||||||||||||||||    
T  19936377 agcaatgttatagggtatagagtgttgggcggttaagaaccaacatga 19936424  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 9592594 - 9592636
Alignment:
Q  145 tgttgtatggtatggagtgttgggaggttaagaaccaacatga 187  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||    
T  9592594 tgttgtatggtacggagtgttgggcggttaagaatcaacatga 9592636  T

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Target: scaffold0570 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 2692 - 2649
Alignment:
Q  145 tgttgtatggtatggagtgttgggaggttaagaaccaacatgat 188  Q
    |||||||||||||||||||||||| ||||||||  |||||||||    
T  2692 tgttgtatggtatggagtgttgggcggttaagagtcaacatgat 2649  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 38606861 - 38606904
Alignment:
Q  141 gcaatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||    
T  38606861 gcaatgttgtatggtacggagtgttgggcggttaagagccaaca 38606904  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 32630452 - 32630494
Alignment:
Q  142 caatgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    ||||||||||||||| |||||| |||| |||||||||||||||    
T  32630452 caatgttgtatggtacggagtgctgggcggttaagaaccaaca 32630494  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 43281505 - 43281574
Alignment:
Q  114 aagttctatcgaacagcaggtaagcaagcaatgttgtatggtatggagtgttgggaggttaagaaccaac 183  Q
    ||||||||||| |||||||  || |  ||||||||||||||||  |||||||||| |||||||| |||||    
T  43281505 aagttctatcggacagcagtcaaaccggcaatgttgtatggtacagagtgttgggcggttaagagccaac 43281574  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 7189656 - 7189616
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    |||||||||||||  |||||||||| |||||||||||||||    
T  7189656 atgttgtatggtacagagtgttgggtggttaagaaccaaca 7189616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 15681216 - 15681256
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    |||||||||||||| |||||||||| |||||||| ||||||    
T  15681216 atgttgtatggtatagagtgttgggcggttaagagccaaca 15681256  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 5168684 - 5168730
Alignment:
Q  141 gcaatgttgtatggtatggagtgttgggaggttaagaaccaacatga 187  Q
    |||||||||||||||| |||||| |||| |||||||| |||||||||    
T  5168684 gcaatgttgtatggtacggagtgctgggcggttaagagccaacatga 5168730  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 43308425 - 43308465
Alignment:
Q  144 atgttgtatggtatggagtgttgggaggttaagaaccaaca 184  Q
    ||||||||||| ||||||||||||| ||| |||||||||||    
T  43308425 atgttgtatgggatggagtgttgggcggtaaagaaccaaca 43308465  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 82583 - 82623
Alignment:
Q  147 ttgtatggtatggagtgttgggaggttaagaaccaacatga 187  Q
    |||||||||| ||||||||||| |||||||| |||||||||    
T  82583 ttgtatggtacggagtgttgggcggttaagagccaacatga 82623  T

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