View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_high_11 (Length: 424)
Name: NF7638_high_11
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 169 - 409
Target Start/End: Complemental strand, 31397391 - 31397154
Alignment:
| Q |
169 |
aaatgcattaatagatccttctatttaataaaacttccgaaaatagtcctttttnnnnnnn-gttgaactttttgatccctcaatttttatatttgttgc |
267 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||| |
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| T |
31397391 |
aaatgcattaatagatccttctatttaataaaattcacgaaaatagtccttttcaaaaaatagttgaactcttttatccctcaatttt-atatttgttgc |
31397293 |
T |
|
| Q |
268 |
aattttagtcttaatccacannnnnnnnnaccccaaaatgttgatttttagtgccagaaaatgtgacttttatcccaaaagctatattttcttgagattc |
367 |
Q |
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|||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31397292 |
aattctagtcctattccacatttttt---accccaaaatgttgatttttagtgccagaaaatgtgacttttatctcaaaagctatattttcttgagattc |
31397196 |
T |
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| Q |
368 |
aacatatagggcaataagccaccacaaaaaatcacccatttt |
409 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
31397195 |
aacatatagggcaataaaccaccacaaaaaatcatccatttt |
31397154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 31397555 - 31397445
Alignment:
| Q |
12 |
aaaaaataatttgatctattaaataaaagatgttgtgactgaggttctaacccaaatcccttacttgtgttt--gtgtttcaatgattatttgtcatttt |
109 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31397555 |
aaaaaataatttgatctattaaataaaagattttgtgactgaggttctaacccaaatcccttacttgtgtttgtgtgtttcaatgattatttgtcatttt |
31397456 |
T |
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| Q |
110 |
atctatctatc |
120 |
Q |
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||||||||||| |
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| T |
31397455 |
atctatctatc |
31397445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 25028139 - 25028171
Alignment:
| Q |
87 |
tttcaatgattatttgtcattttatctatctat |
119 |
Q |
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| T |
25028139 |
tttcaatgattatttgtcatttcatctatctat |
25028171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 19943849 - 19943809
Alignment:
| Q |
237 |
tttttgatccctcaatttttatatttgttgcaattttagtc |
277 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
19943849 |
tttttgattcctcaatttttatatttgttgcaattttagtc |
19943809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 5703587 - 5703543
Alignment:
| Q |
231 |
ttgaactttttgatccctcaatttttatatttgttgcaattttagt |
276 |
Q |
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|||||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
5703587 |
ttgaactttttgatcc-tctatttttacatttgttgcaattttagt |
5703543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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