View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_high_14 (Length: 385)
Name: NF7638_high_14
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_high_14 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 42550149 - 42549796
Alignment:
| Q |
18 |
agaacaagtcaagaatttaaagactgctatttcgaagaagacatttacaagtaacatcagagttgctcaaaatatttcaaattacataacttctaaaatg |
117 |
Q |
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| T |
42550149 |
agaacaagt-aagaatttaaagactgcgatttcgaagaagacaattacaagtaacatcagagttgctcgaaatatttcaaattacataacttctaaaatg |
42550051 |
T |
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| Q |
118 |
agttatataaagtttatctaagaagtttttcaaatcagtagttataggtttttcaatgccaaaaacttaaatttgaagagaaaacttgcacaagaaaact |
217 |
Q |
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| T |
42550050 |
agttatataaagtttatctaagaagtttttcaaatcagtagttataggtttttcaatgccaaaaacttaaatttgaagagaaaacttgcacaagaaaact |
42549951 |
T |
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| Q |
218 |
tttgggaagtagaagacacatgacatcatgcaacataggagttgttttattttcttatctataaattgtaaaatcaaacttcaaacaaatgagttcattt |
317 |
Q |
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| T |
42549950 |
tttgagaagtagaagacacatgacatcatgcaacataggagttcgtttattgtcttatctatcaattgtaaaatcaaatttcatacaaatgagtttattt |
42549851 |
T |
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| Q |
318 |
tcgttctttaaaactatactcaacagataaatacattctatcacagaataacata |
372 |
Q |
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| T |
42549850 |
tcgttctttaaaactatactcaacagataaatacactctatcacagaataacata |
42549796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 117047 - 117114
Alignment:
| Q |
255 |
ggagttgttttattttcttatctataaattgtaaaatcaaacttcaaacaaatgagttcattttcgtt |
322 |
Q |
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| T |
117047 |
ggagttggtttatttttttgtctataaattgtaaaatcgaacttcatgcaaatgagatcattttcgtt |
117114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 38538368 - 38538272
Alignment:
| Q |
199 |
aaacttgcacaagaaaacttttgggaagt-agaagacacatgacat-catgcaacataggagttgttttattttcttatctataaattgtaaaatcaa |
294 |
Q |
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| T |
38538368 |
aaacttgcagaagaagactcatgagaagttagaaaacacatgacattcatgcaacatatgagttagtttattt-cttgtctataaattgtaaaatcaa |
38538272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 55314050 - 55313962
Alignment:
| Q |
244 |
catgcaacataggagttgttttattttcttatctataaattgtaaaatcaaacttcaaacaaatgagttcattttcgttctttaaaacta |
333 |
Q |
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| T |
55314050 |
catgtaacatagaagttagtttatttt-ttgtctataaattgtaaaatcaaacttcacgtaaaagagttcattttcattcgataaaacta |
55313962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 30211871 - 30211827
Alignment:
| Q |
290 |
atcaaacttcaaacaaatgagttcattttcgttctttaaaactat |
334 |
Q |
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| T |
30211871 |
atcaaacttcatacaaatgagttcatttttgttcgataaaactat |
30211827 |
T |
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