View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7638_high_17 (Length: 343)

Name: NF7638_high_17
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7638_high_17
NF7638_high_17
[»] chr1 (3 HSPs)
chr1 (125-328)||(15602768-15602971)
chr1 (14-121)||(15602996-15603103)
chr1 (81-121)||(41315672-41315712)
[»] scaffold0654 (1 HSPs)
scaffold0654 (73-122)||(1768-1817)
[»] scaffold0652 (1 HSPs)
scaffold0652 (73-121)||(5934-5982)
[»] chr3 (5 HSPs)
chr3 (78-122)||(11990714-11990758)
chr3 (75-122)||(33997447-33997494)
chr3 (80-122)||(16350452-16350494)
chr3 (75-122)||(9648288-9648335)
chr3 (80-122)||(9628766-9628808)
[»] scaffold0308 (1 HSPs)
scaffold0308 (73-122)||(8397-8446)
[»] scaffold0177 (1 HSPs)
scaffold0177 (73-122)||(26756-26805)
[»] scaffold0051 (1 HSPs)
scaffold0051 (73-122)||(51052-51101)
[»] scaffold0014 (3 HSPs)
scaffold0014 (78-122)||(139700-139744)
scaffold0014 (75-122)||(105288-105335)
scaffold0014 (75-122)||(136776-136823)
[»] chr6 (1 HSPs)
chr6 (80-122)||(30028540-30028582)
[»] scaffold0019 (1 HSPs)
scaffold0019 (73-122)||(126671-126720)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 125 - 328
Target Start/End: Complemental strand, 15602971 - 15602768
Alignment:
Q  125 agcagttgtcattcgtccagtttacataacccattgatcaatcgtcatgaaagtcaagggcctgctggacatcaccgttaagacaaagacctttgaaagt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15602971 agcagttgtcattcgtccagtttacataacccattgatcaatcgtcatgaaagtcaagggcctgctggacatcaccgttaagacaaagacctttgaaagt 15602872  T
Q  225 gcggccaagattaccacatctagctgataactgatatgaaggatcttgaggaatagaggaaaggaaacattgaattgacctaattgacagtaacaattga 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15602871 gcggccaagattaccacatctagctgataactgatatgaaggatcttgaggaacagaggaaaggaaacattgaattgacctaattgacagtaacaattga 15602772  T
Q  325 tgat 328  Q
    ||||    
T  15602771 tgat 15602768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 15603103 - 15602996
Alignment:
Q  14 aaaaccaacaataccaaaatcatagattaaagtattgtaagtgacaactgcttggatactcacaaatttatctttacacaaactatcaatgattgtgtta 113  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603103 aaaaccaacaataccaaaatcataaattaaagtattgtaagtgacaactgcttggatactcacaaatttatctttacacaaactatcaatgattgtgtta 15603004  T
Q  114 tacattac 121  Q
    ||||||||    
T  15603003 tacattac 15602996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 41315712 - 41315672
Alignment:
Q  81 ttatctttacacaaactatcaatgattgtgttatacattac 121  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  41315712 ttatctttacacaaaccatcaattattgtgttatacattac 41315672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 1768 - 1817
Alignment:
Q  73 tcacaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  1768 tcaccaatttatctttacacaaactatcaatgattgtgctatacattacc 1817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 5934 - 5982
Alignment:
Q  73 tcacaaatttatctttacacaaactatcaatgattgtgttatacattac 121  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  5934 tcaccaatttctctttacacaaactatcaatgattgtgttatacattac 5982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 11990758 - 11990714
Alignment:
Q  78 aatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  11990758 aatttatgtttacacaaactatcaatgattgtgttatacattacc 11990714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 33997494 - 33997447
Alignment:
Q  75 acaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||||    
T  33997494 acaaattttcctttacacaaactatcaatgattgtgctatacattacc 33997447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 16350494 - 16350452
Alignment:
Q  80 tttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  16350494 tttatctttacacaaaccatcaatgattgtgctatacattacc 16350452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 9648288 - 9648335
Alignment:
Q  75 acaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||| ||||||| |||||||||||||||||| |||| |||||||||||    
T  9648288 acaagtttatctctacacaaactatcaatgagtgtgctatacattacc 9648335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 9628766 - 9628808
Alignment:
Q  80 tttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||||||||||||||||||||||| |||||  |||||||||||    
T  9628766 tttatctttacacaaactatcaattattgtcctatacattacc 9628808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 8446 - 8397
Alignment:
Q  73 tcacaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  8446 tcaccaatttctctttacacaaactatcgatgattgtgttatacattacc 8397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 26805 - 26756
Alignment:
Q  73 tcacaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  26805 tcactaatttctctttacacaaactatcaatgattgtgctatacattacc 26756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 51052 - 51101
Alignment:
Q  73 tcacaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  51052 tcacaaatatctctttacacaaactatcaatgattgtgctatacattacc 51101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 139744 - 139700
Alignment:
Q  78 aatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||||||||||||||||||||||||||||||| |||| |||||||    
T  139744 aatttatctttacacaaactatcaatgattgtattatgcattacc 139700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 105288 - 105335
Alignment:
Q  75 acaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||||    
T  105288 acaagtttatctttgcacaaactatcaatgactgtgttatacattacc 105335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 136823 - 136776
Alignment:
Q  75 acaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||| |||||||||||||||||||||||| ||| || |||||||||||    
T  136823 acaagtttatctttacacaaactatcaataattatgctatacattacc 136776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 30028582 - 30028540
Alignment:
Q  80 tttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||||| |||||||||||||||||||||||  |||||||||||    
T  30028582 tttatccttacacaaactatcaatgattgtagtatacattacc 30028540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 126671 - 126720
Alignment:
Q  73 tcacaaatttatctttacacaaactatcaatgattgtgttatacattacc 122  Q
    |||| ||||||||||||||||||||||| || |||||| | |||||||||    
T  126671 tcaccaatttatctttacacaaactatcgattattgtgctgtacattacc 126720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University