View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7638_high_22 (Length: 285)

Name: NF7638_high_22
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7638_high_22
NF7638_high_22
[»] chr1 (3 HSPs)
chr1 (13-285)||(34904628-34904900)
chr1 (219-271)||(34896122-34896174)
chr1 (231-267)||(34915983-34916019)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 34904628 - 34904900
Alignment:
Q  13 aatatcaactacaaccaacaattgtgtgtcaacttcggaactccttttctctatcacacttttnnnnnnncgtaaataatataaaacaaacgttatgatc 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| |||    
T  34904628 aatatcaactacaaccaacaattgtgtgtgaacttcggaactccttttctctatcacacttttaaaaaaacgtaaataatataaaacaaacgttataatc 34904727  T
Q  113 tttcccaaacataaataatatagctctctcccacatctatgtttaaccaaaatcaatcattcatgtctattgaatcatgcaactgttgggtgcaccaaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34904728 tttcccaaacataaataatatagctctctcccacatctatgtttaaccaaaatcaatcattcatgtctattgaatcatgcaactgttgggtgcaccaaag 34904827  T
Q  213 gcagacgcaggggtgctagtagcaccaaatgcaggagtgcatgtcgaaccaaatgctggctgggatgaagcgc 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34904828 gcagacgcaggggtgctagtagcaccaaatgcaggagtgcatgtcgaaccaaattctggctgggatgaagcgc 34904900  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 34896122 - 34896174
Alignment:
Q  219 gcaggggtgctagtagcaccaaatgcaggagtgcatgtcgaaccaaatgctgg 271  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  34896122 gcaggggtgctcgtagcaccaaatgcaggagttcctgtcgaaccaaatgctgg 34896174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 34915983 - 34916019
Alignment:
Q  231 gtagcaccaaatgcaggagtgcatgtcgaaccaaatg 267  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34915983 gtagcaccaaatgcaggagtgcctgtcgaaccaaatg 34916019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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