View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7638_high_24 (Length: 282)
Name: NF7638_high_24
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 144 - 276
Target Start/End: Original strand, 28289459 - 28289591
Alignment:
| Q |
144 |
ggaaccttatgatggacctggtcaagcaatggggctttcatattcggtttcggagggagttaaagttccatccattttgaagaatgtatttaaggagctt |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28289459 |
ggaaccttatgatggacctggtcaagcaatggggctttcatattcggttccggagggagttaaagttccatccattttgaagaatgtatttaaggagctt |
28289558 |
T |
|
| Q |
244 |
aagaaagatattggttgttccgtttcatctcac |
276 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |
|
|
| T |
28289559 |
aagaaagatattggttgttccattccatctcac |
28289591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 28289338 - 28289399
Alignment:
| Q |
18 |
cttaatactactcctttccattccgttaaggctgtgattcttggccaggtttgtggatttca |
79 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28289338 |
cttaatactactccttttcattccgttaaggctgtgattcttggccaggtttgtggatttca |
28289399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 28300525 - 28300640
Alignment:
| Q |
148 |
ccttatgatggacctggtcaagcaatggggctttcatattcggtttcggagggagttaaagttccatccattttgaagaatgtatttaaggagcttaaga |
247 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||| | || ||||| ||||||||||| | |||| ||| ||||||||||||||||| |
|
|
| T |
28300525 |
ccttatcatggacctggtcaagcaatggggctttcattctcggttcctgaaggagtcaaagttccatctagtttggttaatatatttaaggagcttaagc |
28300624 |
T |
|
| Q |
248 |
aagatattggttgttc |
263 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
28300625 |
aagaccttggttgttc |
28300640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 28278441 - 28278500
Alignment:
| Q |
18 |
cttaatactactcctttccattccgttaaggctgtgattcttggccaggtttgtggattt |
77 |
Q |
| |
|
||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28278441 |
cttaatactactccttttcatcctgttaaggttgtgattcttggccaggtttgtggattt |
28278500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 28281228 - 28281287
Alignment:
| Q |
19 |
ttaatactactcctttccattccgttaaggctgtgattcttggccaggtttgtggatttc |
78 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28281228 |
ttaacactactccttttcattctgttaaggctgtgatccttggccaggtttgtggatttc |
28281287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 28281351 - 28281468
Alignment:
| Q |
144 |
ggaaccttatgatggacctggtcaagcaatggggctttcatattcggtttcggagggagttaaagttccatccattttgaagaatgtatttaaggagctt |
243 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||||| | ||||| || ||||||||| ||||||||||||| |||||||| || |
|
|
| T |
28281351 |
ggaaccttattctggacctggtcaagcaatggggctatcattctcggttcctcgaggagtccaatttccatccactttgaagaatgtacttaaggaggtt |
28281450 |
T |
|
| Q |
244 |
aagaaagatattggttgt |
261 |
Q |
| |
|
||||| ||| ||| |||| |
|
|
| T |
28281451 |
aagaatgatcttgattgt |
28281468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 28300115 - 28300175
Alignment:
| Q |
18 |
cttaatactactcctttccattccgttaaggctgtgattcttggccaggtttgtggatttc |
78 |
Q |
| |
|
||||||||||| ||||| || || | ||||| |||||| |||||||||||||||||||||| |
|
|
| T |
28300115 |
cttaatactaccccttttcaatctgctaaggttgtgatccttggccaggtttgtggatttc |
28300175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 28746964 - 28746917
Alignment:
| Q |
31 |
ctttccattccgttaaggctgtgattcttggccaggtttgtggatttc |
78 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28746964 |
cttttcattctgttaaggctgtgatccttggccaggtttgtggatttc |
28746917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University