View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_high_25 (Length: 276)
Name: NF7638_high_25
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 49923027 - 49923288
Alignment:
| Q |
1 |
atactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgctctaagtccatcatggaactctgttagtccaaactactcacaac |
100 |
Q |
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| T |
49923027 |
atactcactgaaaactgcatagtttcacacatggatctggattttctcattcccgttctaagtccatcatggaactctgttagtccaaactactcacaac |
49923126 |
T |
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| Q |
101 |
ccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttgcattttacgaatctgggtcaggttgttttactcgtggga-ttt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49923127 |
ccatttctttaattcaatgatttattacaattcaatcatcaatttcatttctttttgcattttacgaatctgggtcaggttgttttactcgtgggatttt |
49923226 |
T |
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| Q |
200 |
tttacttacttggccattgttggatccattctccctgaaaaacttgttcctggtgttgttct |
261 |
Q |
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| T |
49923227 |
tttacttacttggccattgttggatccattctccctggaaaacttgttcctggtgttgttct |
49923288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 26778047 - 26777787
Alignment:
| Q |
1 |
atactcactgaaaactacatagtttcatacatggatctgaattttctcattcccgctctaagtccatcatggaactctgttagtccaaactactcacaac |
100 |
Q |
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|||||||||||||||| |||||| ||| ||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||| ||||||||||||||| |
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| T |
26778047 |
atactcactgaaaactgcatagtgtcacacatggatctggattttctcattcacgctctaattccatcatggaactccgttagttcaaactactcacaac |
26777948 |
T |
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| Q |
101 |
ccatttctttaattcaatgatttattacaattcaatcatcaatttcacttctttttgcattttacgaatctgggtcaggttgttttactcgtgggatttt |
200 |
Q |
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||||| |||||||||||| ||||||| |||||| |||||||||||| |||||||||||||| |||||||||||||||||| |||||| | ||| |||| |
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| T |
26777947 |
ccattactttaattcaatcatttattccaattctgtcatcaatttcatatctttttgcatttttcgaatctgggtcaggttgctttacttgcgggttttt |
26777848 |
T |
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| Q |
201 |
ttacttacttggccattgttggatccattctccctgaaaaacttgttcctggtgttgttct |
261 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
26777847 |
ttacttacttagccattgttggatccattctccctggaaagcttgttcctggtgttgttct |
26777787 |
T |
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