View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_high_33 (Length: 257)
Name: NF7638_high_33
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 812676 - 812910
Alignment:
| Q |
3 |
caagctcttccgttgcaactaaagggctgctacttattaagaagcacaattaattaaattttacatacatctcataatacattttaaagcatgtctcatg |
102 |
Q |
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| T |
812676 |
caagctcttccgttgcaactaaagggctgctacttattaagaagcacaattaattaaattttacatacatctcataatacattttaaagcatatctcatg |
812775 |
T |
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| Q |
103 |
aaaacaaaacaatacaatataataccccataagtacacnnnnnnncaaatttgaattactaagaaagtcaattataaacaatctctacacaaccgcacca |
202 |
Q |
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| T |
812776 |
aaaacaaaacaatacaatacaataccccataagtacacaaaaaaaaaaaattgaattactaagaaagtcaattataaacaatctctgcacaaccgcacca |
812875 |
T |
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| Q |
203 |
ccccattaaatagtttcat-aagggggaaagggat |
236 |
Q |
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| T |
812876 |
ccccattaaatagtttcatgaggggggaaagggat |
812910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 14306516 - 14306468
Alignment:
| Q |
40 |
taagaagcacaattaattaaattttacatacatctcataatacatttta |
88 |
Q |
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|||||||||||||| ||||||||| | || ||||||||||||||||||| |
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| T |
14306516 |
taagaagcacaattgattaaatttcatatccatctcataatacatttta |
14306468 |
T |
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