View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_high_37 (Length: 244)
Name: NF7638_high_37
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 41990386 - 41990189
Alignment:
| Q |
1 |
caaaaccttctacttctgacacattaagcatgaacatgaatttaaatgataccttattgcctttaataccttagctaagatactatatcccatggttcat |
100 |
Q |
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| T |
41990386 |
caaaaccttctacttctgacacattaagcatgaacatgaatttaaatgataccttattgcctttaataccttagctaagatactatatcccatggttcat |
41990287 |
T |
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| Q |
101 |
acatggtattcttacgaatctaaaatgctaacatcatagttaggttcttatctcattcacaattatccagaaaccatacattccaaaaaatcaccaaa |
198 |
Q |
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| T |
41990286 |
acatggtattcttatgaatctaaaatgctaacatcatagttaggttcttatctcattcacaattatccagaaaccatacattccaaaaaatcaccaaa |
41990189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 1218627 - 1218718
Alignment:
| Q |
134 |
tcatagttaggttcttatctcattcacaattatccagaaaccatacattccaaaaaatcaccaaannnnnnnagtaaaccaaaggtaccctc |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1218627 |
tcatagttaggttcttatctcattcacaattatccagaaaccatacattccaaaaaatcaccaaatttttttagtaaaccaaaggtaccctc |
1218718 |
T |
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