View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7638_high_4 (Length: 520)
Name: NF7638_high_4
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 514
Target Start/End: Original strand, 35449557 - 35450052
Alignment:
| Q |
19 |
atatgtgtcgggcacgacacatgtctgacaccagaacacgtctctaattcgaggagtgtctgtgcttcataactttacttacatgttttttgcaatttga |
118 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449557 |
atatgtgtcagacacgacacatgtccgacaccagaacacgtctctaatccgaggagtgtctgtgcttcataactttacttacatgttttttgcaatttga |
35449656 |
T |
|
| Q |
119 |
gtactaatgattcttaattgttatgcagtcaatggaggatttgagacaatcacttctatacacaactttagagcttgaacaaacaagagtaacagcacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449657 |
gtactaatgattcttaattgttatgcagtcaatggaggatttgagacaatcacttctatacacaactttagagcttgaacaaacaagagtaacagcacaa |
35449756 |
T |
|
| Q |
219 |
gaagagctcacnnnnnnngatgaacaactaatgaaccttaaagatctaatcaacaacatcattagagaaagagatgaagcacaagaaaaatgtgaaagac |
318 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35449757 |
gaagaactcacaaaaaaagatgaacaactaatgaaccttaaagatctaatcaacaacatcattagagaaagagatgaagcacaagaaaaatgtcaaagac |
35449856 |
T |
|
| Q |
319 |
ttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagtttcaagcattgaagatgaacaagttacaagaaaaggaattgactc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449857 |
ttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagtttcaagcattgaagatgaacaagttacaagaaaaggaattgactc |
35449956 |
T |
|
| Q |
419 |
aaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttcaccaattattgatcaatcaatgattgaagtactaacaccaaa |
514 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449957 |
aaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcaccaattattgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 189 - 350
Target Start/End: Complemental strand, 21010794 - 21010633
Alignment:
| Q |
189 |
gagcttgaacaaacaagagtaacagcacaagaagagctcacnnnnnnngatgaacaactaatgaaccttaaagatctaatcaacaacatcattagagaaa |
288 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| || | |||||||||||| ||||| ||||| || ||||||| | || ||||||| |
|
|
| T |
21010794 |
gagctagaacaaacaagagtaacagtacaagaagaactaagaaaaagagatgaacaactacataacctaaaagaacttttcaacaaagttataagagaaa |
21010695 |
T |
|
| Q |
289 |
gagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
350 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||||| || ||||||| |||||| |
|
|
| T |
21010694 |
gagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 21864863 - 21864926
Alignment:
| Q |
24 |
tgtcgggcacgacacatgtctgacaccagaacacgtctctaattcgaggagtgtctgtgcttcata |
89 |
Q |
| |
|
|||||| |||||||| |||| |||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
21864863 |
tgtcggacacgacacgtgtccgacaccgggacacgtct--aattcgaggagtgtctgtgcttcata |
21864926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 27932289 - 27932353
Alignment:
| Q |
23 |
gtgtcgggcacgacacatgtctgacaccagaacacgtctctaattcgaggagtgtctgtgcttcata |
89 |
Q |
| |
|
||||||| |||||||| |||| |||||||| ||||| || |||||||||||||| ||||||||||| |
|
|
| T |
27932289 |
gtgtcggacacgacacgtgtcggacaccaggacacgcct--aattcgaggagtgtttgtgcttcata |
27932353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 26553817 - 26553868
Alignment:
| Q |
40 |
tgtctgacaccagaacacgtctctaattcgaggagtgtctgtgcttcataactt |
93 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
26553817 |
tgtctgacatcagaacacgcct--aattcgaggagtgtatgtgcttcataactt |
26553868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University