View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_high_8 (Length: 442)
Name: NF7638_high_8
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 32272494 - 32272080
Alignment:
| Q |
12 |
gagaagaaacatcggatgataaagataatataatttaaaactcgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgc |
111 |
Q |
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| T |
32272494 |
gagaacaaacatcggatgagaaagataatataatttaaaacttgcaaaccttataaacatgttgtgtctgtgtctagatccgtgtcaagaaacatttcgc |
32272395 |
T |
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| Q |
112 |
ttttataaattatattattttcatgttcattaaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatga |
211 |
Q |
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| T |
32272394 |
ttttataaattatattattttcatgttcat-aaattattcaattttggtcttaaccaataataagcatttcaaagtaatatacattgtttatatgtatga |
32272296 |
T |
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| Q |
212 |
attattttgattttgatcttcatgtcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtc |
311 |
Q |
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| T |
32272295 |
attattttgattttgatcttcatgtcacacagtgaaggaagttaagaaaaagcaaaaatggtgaaaatttgttgcattggagctggatatgttggtggtc |
32272196 |
T |
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| Q |
312 |
ccacaatggctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaacagcgaccacctacc |
411 |
Q |
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| T |
32272195 |
ccacaatggctgtgattgccttgaagtgtcctaagattgcagtaaccgtggtcgatatttcagcgccgagaatcaacggttggaacagcgaccacctacc |
32272096 |
T |
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| Q |
412 |
gatctatgagccaggt |
427 |
Q |
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| T |
32272095 |
gatctacgagccaggt |
32272080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 45416311 - 45416267
Alignment:
| Q |
287 |
attggagctggatatgttggtggtcccacaatggctgtgattgcc |
331 |
Q |
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| T |
45416311 |
attggagctggatatgtagggggtccaacaatggctgttattgcc |
45416267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 265 - 350
Target Start/End: Complemental strand, 19327411 - 19327326
Alignment:
| Q |
265 |
aaaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgccttgaagtgtcctaagattg |
350 |
Q |
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| T |
19327411 |
aaaaatggtgaagatttgttgcattggagctggctatgttggtggtccaacaatggctgtgattgctttgaagtgtcctgagattg |
19327326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 3665277 - 3665213
Alignment:
| Q |
266 |
aaaatggtgaaaatttgttgcattggagctggatatgttggtggtcccacaatggctgtgattgc |
330 |
Q |
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| T |
3665277 |
aaaatggtgaagatttgctgcattggtgccggatatgtcggtggtccaacaatggcagtcattgc |
3665213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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