View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7638_low_1 (Length: 681)

Name: NF7638_low_1
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7638_low_1
NF7638_low_1
[»] chr6 (2 HSPs)
chr6 (18-637)||(10796950-10797569)
chr6 (629-672)||(10796360-10796403)
[»] chr4 (6 HSPs)
chr4 (18-637)||(50078540-50079159)
chr4 (217-474)||(50070300-50070557)
chr4 (629-672)||(50077950-50077993)
chr4 (159-192)||(50070604-50070637)
chr4 (629-665)||(50112144-50112180)
chr4 (489-517)||(50069988-50070016)
[»] chr2 (6 HSPs)
chr2 (381-452)||(13501504-13501575)
chr2 (381-452)||(13515307-13515378)
chr2 (33-85)||(13500902-13500954)
chr2 (406-446)||(13541874-13541914)
chr2 (381-446)||(13485788-13485853)
chr2 (381-446)||(13509549-13509614)


Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 637
Target Start/End: Complemental strand, 10797569 - 10796950
Alignment:
Q  18 gttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaa-gtaccgtatgn 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||     
T  10797569 gttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaatgtatcatatgt 10797470  T
Q  117 nnnnnnatgttattgattaaccaaacatatatgtctgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggat 216  Q
          ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797469 ttttttatgttattgatgaagcaa-catatatgtctgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggat 10797371  T
Q  217 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattgg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  10797370 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttgg 10797271  T
Q  317 aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccatt 416  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10797270 aaagacgacagttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccatt 10797171  T
Q  417 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797170 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaa 10797071  T
Q  517 taaagttttttcttgtcagtttcttttcttacttttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797070 taaagttttttcttgtcagtttcttttcttacttttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaat 10796971  T
Q  617 gaaatcactatccaagtaata 637  Q
    ||||||||||||||| |||||    
T  10796970 gaaatcactatccaaataata 10796950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 629 - 672
Target Start/End: Complemental strand, 10796403 - 10796360
Alignment:
Q  629 caagtaatagagaattttgtagcataaaagaatcacaggttctg 672  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  10796403 caagtaatagagaattttgtagcataaaagaatcacaagttctg 10796360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 637
Target Start/End: Complemental strand, 50079159 - 50078540
Alignment:
Q  18 gttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaa-gtaccgtatgn 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||     
T  50079159 gttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttgagggttagtaaacacattttctatacaaaatgtatcatatgt 50079060  T
Q  117 nnnnnnatgttattgattaaccaaacatatatgtctgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggat 216  Q
          ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50079059 ttttttatgttattgatgaagcaa-catatatgtctgcaggaggacaaaccttgtatgtgttgcaccaaattgatgcaattgatgaagcaaacttgggat 50078961  T
Q  217 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattgg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  50078960 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttgg 50078861  T
Q  317 aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccatt 416  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50078860 aaagacgacagttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccatt 50078761  T
Q  417 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaa 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078760 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaa 50078661  T
Q  517 taaagttttttcttgtcagtttcttttcttacttttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078660 taaagttttttcttgtcagtttcttttcttacttttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaat 50078561  T
Q  617 gaaatcactatccaagtaata 637  Q
    ||||||||||||||| |||||    
T  50078560 gaaatcactatccaaataata 50078540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 217 - 474
Target Start/End: Complemental strand, 50070557 - 50070300
Alignment:
Q  217 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattgg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  50070557 ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctattgg 50070458  T
Q  317 aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccatt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  50070457 aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccatt 50070358  T
Q  417 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50070357 gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt 50070300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 629 - 672
Target Start/End: Complemental strand, 50077993 - 50077950
Alignment:
Q  629 caagtaatagagaattttgtagcataaaagaatcacaggttctg 672  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  50077993 caagtaatagagaattttgtagcataaaagaatcacaagttctg 50077950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 50070637 - 50070604
Alignment:
Q  159 ggacaaaccttgtatgtgttgcaccaaattgatg 192  Q
    ||||||||||||||||||||||||||||||||||    
T  50070637 ggacaaaccttgtatgtgttgcaccaaattgatg 50070604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 665
Target Start/End: Original strand, 50112144 - 50112180
Alignment:
Q  629 caagtaatagagaattttgtagcataaaagaatcaca 665  Q
    ||||||| |||||||||||||||||||||||||||||    
T  50112144 caagtaaaagagaattttgtagcataaaagaatcaca 50112180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 489 - 517
Target Start/End: Complemental strand, 50070016 - 50069988
Alignment:
Q  489 tttgtgtcttcttaatcttccaatgtaat 517  Q
    |||||||||||||||||||||||||||||    
T  50070016 tttgtgtcttcttaatcttccaatgtaat 50069988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 13501504 - 13501575
Alignment:
Q  381 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa 452  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||   |||||| |||||| |||||||||||    
T  13501504 ggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattacaactaa 13501575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 13515307 - 13515378
Alignment:
Q  381 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa 452  Q
    |||||||| |||||||||| |||||||||||| || ||||||||   |||||| |||||| |||||||||||    
T  13515307 ggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaa 13515378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 13500902 - 13500954
Alignment:
Q  33 ggaaatggtggtgccggcaccatcaagaagctcactttcgttgagggttagta 85  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||| ||| ||||    
T  13500902 ggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggtcagta 13500954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 13541874 - 13541914
Alignment:
Q  406 tcaaggccattgagggttatgttttggccaatcctaattac 446  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  13541874 tcaaggccattgagggttatgttttggcaaaccctaattac 13541914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 13485788 - 13485853
Alignment:
Q  381 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac 446  Q
    |||||||| | |||||||| ||||||||||||  |||| ||||| |||||||| |||||| |||||    
T  13485788 ggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattac 13485853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 13509549 - 13509614
Alignment:
Q  381 ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac 446  Q
    |||||||| | |||||||| ||||||||| ||  |||| |||||||||||||| |||||| |||||    
T  13509549 ggcaaagctaggggtgatggtcttttcaaagctcttgaaggttatgttttggcaaatcctgattac 13509614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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