View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_12 (Length: 421)
Name: NF7638_low_12
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 256 - 407
Target Start/End: Complemental strand, 37591478 - 37591327
Alignment:
| Q |
256 |
tggatggaagtactaggtttgcaagcaaaatatttttatatttattgtctttatagtcacgtataaaattgagattattttattaatatcatgtatatac |
355 |
Q |
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| T |
37591478 |
tggatggaagtactaggtttgcaagcaaaatatttttatatttattgtctttatagtcacgtataaaattgagattattttattaatatcatgtatatac |
37591379 |
T |
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| Q |
356 |
aaaaacttacatatgaatgaaagacaaatgaacaactttcgtgtttaatcat |
407 |
Q |
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| T |
37591378 |
aaaaacttacatatgaatgaaagacaaatgaacaaccttcgtgtttaatcat |
37591327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 37591632 - 37591542
Alignment:
| Q |
102 |
aaattgaatttagaatctgatttccaaattctaaaagacttaccctacttattgtttacttgaaacagaagacatgagggtataagaatcc |
192 |
Q |
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| T |
37591632 |
aaattgaatttagaatctgatttccaaattctaaaagacttaccctacttgttgtttacttgaaacagaagacatgagggtataagaatcc |
37591542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 28515412 - 28515327
Alignment:
| Q |
18 |
aattgcaattgcagatttcatccttttatatcatttcatatctttcttcgatcatttccttcatcttgtttaattgaacccatcaa |
103 |
Q |
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| T |
28515412 |
aattgcaattgcagatttcatccttttatatcatttcatatctttcttctatcatttccttcatcttgtttaattgaacccatcaa |
28515327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 28510443 - 28510359
Alignment:
| Q |
18 |
aattgcaattgcagatttcatccttttatatcatttcatatctttcttcgatcatttccttcatcttgtttaattgaacccatca |
102 |
Q |
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| T |
28510443 |
aattgcaattgcagatttcatccttttatatcatttcatatctttcttctatcatttccttcatcttgtttaattgaacccatca |
28510359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 49073511 - 49073595
Alignment:
| Q |
18 |
aattgcaattgcagatttcatccttttatatcatttcatatctttcttcgatcatttccttcatcttgtttaattgaacccatca |
102 |
Q |
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| T |
49073511 |
aattgcaattgcagatttcatccttttatatcatttcatatctttcttctatcatttccttcatcttgtttaattgaacccatca |
49073595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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