View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7638_low_14 (Length: 411)

Name: NF7638_low_14
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7638_low_14
NF7638_low_14
[»] chr2 (15 HSPs)
chr2 (1-395)||(8412470-8412864)
chr2 (1-395)||(8434568-8434962)
chr2 (1-395)||(8394585-8394979)
chr2 (1-211)||(8406350-8406560)
chr2 (1-211)||(8395012-8395222)
chr2 (1-251)||(8431498-8431743)
chr2 (56-192)||(8417746-8417882)
chr2 (56-192)||(8375339-8375475)
chr2 (56-192)||(8439628-8439764)
chr2 (80-199)||(8368812-8368931)
chr2 (80-199)||(8400479-8400598)
chr2 (80-199)||(8422056-8422175)
chr2 (304-395)||(8431775-8431866)
chr2 (63-197)||(8404470-8404604)
chr2 (304-395)||(8406694-8406785)


Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 8412470 - 8412864
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412470 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 8412569  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412570 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8412669  T
Q  201 ctgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgat 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8412670 ctgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgat 8412769  T
Q  301 tacttttagttcctgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaatta 395  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8412770 tacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattaatta 8412864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 8434568 - 8434962
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434568 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 8434667  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434668 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8434767  T
Q  201 ctgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgat 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8434768 ctgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgat 8434867  T
Q  301 tacttttagttcctgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaatta 395  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8434868 tacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattaatta 8434962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 8394979 - 8394585
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394979 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 8394880  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394879 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8394780  T
Q  201 ctgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgat 300  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394779 ctgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgat 8394680  T
Q  301 tacttttagttcctgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaatta 395  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  8394679 tacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgatta 8394585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 8406350 - 8406560
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406350 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 8406449  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406450 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8406549  T
Q  201 ctgtagcatta 211  Q
    |||||||||||    
T  8406550 ctgtagcatta 8406560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 8395222 - 8395012
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8395222 agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgagagtaatcatttttatt 8395123  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8395122 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 8395023  T
Q  201 ctgtagcatta 211  Q
    |||||||||||    
T  8395022 ctgtagcatta 8395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 8431498 - 8431743
Alignment:
Q  1 agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt 100  Q
    |||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||    
T  8431498 agcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgtttatt 8431597  T
Q  101 gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa 200  Q
    ||||| || ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||||||||||    
T  8431598 gagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttgaa 8431692  T
Q  201 ctgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatattt 251  Q
     ||| || |||||| ||||| ||||||||||||||||||||||||||||||    
T  8431693 ttgtggctttagaatttgtagaatgcttttgttgttgatcttgtaatattt 8431743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 8417746 - 8417882
Alignment:
Q  56 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 155  Q
    |||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | ||||||||||||||    
T  8417746 gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca 8417845  T
Q  156 tttctattctgtctgatacagcttccaagactgcata 192  Q
    |||| |||||||| || ||| ||||||||||||||||    
T  8417846 tttcaattctgtcagaaacaacttccaagactgcata 8417882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
Q  56 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 155  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| |||||||    
T  8375475 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca 8375376  T
Q  156 tttctattctgtctgatacagcttccaagactgcata 192  Q
    |||| | ||| || || || |||||||||| ||||||    
T  8375375 tttcaactctatcagaaactgcttccaagattgcata 8375339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
Q  56 gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca 155  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| |||||||    
T  8439628 gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca 8439727  T
Q  156 tttctattctgtctgatacagcttccaagactgcata 192  Q
    |||| | ||| || || || |||||||||| ||||||    
T  8439728 tttcaactctatcagaaactgcttccaagattgcata 8439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
Q  80 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 179  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8368812 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8368911  T
Q  180 ccaagactgcatagagttga 199  Q
    | |  | |||||||||||||    
T  8368912 caagaattgcatagagttga 8368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
Q  80 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 179  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8400598 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8400499  T
Q  180 ccaagactgcatagagttga 199  Q
    | |  | |||||||||||||    
T  8400498 caagaattgcatagagttga 8400479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
Q  80 gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt 179  Q
    |||||||| ||||| || || ||||||||||||||  ||||||| || |  ||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  8422175 gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt 8422076  T
Q  180 ccaagactgcatagagttga 199  Q
    | |  | |||||||||||||    
T  8422075 caagaattgcatagagttga 8422056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 8431775 - 8431866
Alignment:
Q  304 ttttagttcctgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaatta 395  Q
    ||||| ||| |||||| ||||||||||||| ||||| ||  ||| |||||||||||||| ||| ||||| ||||  |||| |||||||||||    
T  8431775 ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcattaatta 8431866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
Q  63 cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat 162  Q
    ||||||| |||| ||| ||||| || ||||| || || |||||||||| |||  | ||||| |||| ||||||||  || | ||| | ||||||||| ||    
T  8404470 cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat 8404569  T
Q  163 tctgtctgatacagcttccaagactgcatagagtt 197  Q
    ||||||||||||||| ||| | | |||||||||||    
T  8404570 tctgtctgatacagcctccgaaattgcatagagtt 8404604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 8406694 - 8406785
Alignment:
Q  304 ttttagttcctgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaatta 395  Q
    ||||| ||| |||||| ||||||||||||| ||||| ||  ||| |||||||||||||| ||| ||||| ||||  |||| ||| |||||||    
T  8406694 ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcgttaatta 8406785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University