View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7638_low_16 (Length: 380)

Name: NF7638_low_16
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7638_low_16
NF7638_low_16
[»] chr5 (10 HSPs)
chr5 (13-364)||(17383638-17383999)
chr5 (13-294)||(17377343-17377631)
chr5 (13-252)||(17392453-17392709)
chr5 (216-297)||(20111938-20112019)
chr5 (216-278)||(13712176-13712238)
chr5 (216-296)||(19653900-19653980)
chr5 (216-278)||(19806905-19806967)
chr5 (67-116)||(17380105-17380154)
chr5 (216-276)||(1347935-1347995)
chr5 (66-171)||(20112075-20112183)
[»] chr1 (1 HSPs)
chr1 (54-357)||(26052801-26053110)
[»] chr2 (1 HSPs)
chr2 (216-278)||(15784656-15784718)
[»] scaffold0009 (3 HSPs)
scaffold0009 (214-278)||(40602-40666)
scaffold0009 (66-103)||(40809-40846)
scaffold0009 (214-270)||(33992-34048)
[»] chr3 (3 HSPs)
chr3 (216-278)||(24912861-24912923)
chr3 (217-278)||(32226559-32226620)
chr3 (217-298)||(32242030-32242111)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 17383999 - 17383638
Alignment:
Q  13 aatatatgttgcgaattgaagatcagcttcgcaagct----agtt--taacttcaaattttgttagatgagacgaaacacattctggaacatgatctgga 106  Q
    |||||||||||||||| ||| ||||||||| ||||||    |||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17383999 aatatatgttgcgaatcgaaaatcagcttcccaagcttcatagtgcataacttcaaattttgttagattagacgaaacacattctggaacatgatctgga 17383900  T
Q  107 tattcccaat---ctatggttgttgaattaatcgcctgtcgatccgagacaaaataggatttgtaaaa-tactcaatagaagataaggacgggtaaaaat 202  Q
    ||||||||||   ||||| ||| ||||||   |||||||| ||||||||||||||||||| ||||||| ||||| |||||||| ||| ||  ||||||||    
T  17383899 tattcccaatgctctatgcttgctgaattctccgcctgtcaatccgagacaaaataggatatgtaaaaatactcgatagaagagaagaacctgtaaaaat 17383800  T
Q  203 tagtaactataataaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgcatccg 302  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17383799 tagtaactataataaacaaacctttagaatggtaagagtttgaagtatgggacaattctgtagcattttcactaccacctcccagttatgaatgcgtccg 17383700  T
Q  303 aaccaagttagttgaagttcccttaagttttcaagcacgggaagtcttttctcaattgtatt 364  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  17383699 aaccaagttagttgaagttcccttaagttttcaagcacgggaaggcttttctcaaatgtatt 17383638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 294
Target Start/End: Complemental strand, 17377631 - 17377343
Alignment:
Q  13 aatatatgttgcgaattgaagatcagcttcgcaagct----ag--tttaacttcaaattttgttagatgagacgaaacacattctggaacatgatctgga 106  Q
    |||||||||||||||| ||| ||||||||||||||||    ||  | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  17377631 aatatatgttgcgaatcgaaaatcagcttcgcaagcttcagagcctataactttaaagtttgttagatgagacgaaacacattctggaacatgatctgga 17377532  T
Q  107 tattcccaatctatggttgttgaattaatcgcctgtcgatccgagacaaaataggatttgtaaaa-tactcaatagaagataaggacgggtaaaaattag 205  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  17377531 tattcccaatctatggttgttgaattattcgcctgtcgatccgagacaaaataggatttgtaaaaatactcaatagaagataagaacgggtataaattag 17377432  T
Q  206 taactataataaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaa 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  17377431 taactataataaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcaataccacctcccagtcatgaa 17377343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 17392709 - 17392453
Alignment:
Q  13 aatatatgttgcgaattgaagatcagcttcgcaagct----agttta--acttcaaattttgttagatgagacgaaacacattctggaacatgatctgga 106  Q
    |||||||||||||||| ||| ||||||||||||||||    ||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17392709 aatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaacatgatctgga 17392610  T
Q  107 tattcccaa---tctatggttgttgaattaatcgcc------tgtcgatccgagacaaaataggatttgt--aaaatactcaatagaagataaggacggg 195  Q
    |||||||||   |||||||||||||||||  |||||      |||| |||||||||||||||||||||||  |||||||| ||||||| | ||| || ||    
T  17392609 tattcccaatgctctatggttgttgaattcttcgcctgtcaatgtcaatccgagacaaaataggatttgtaaaaaatacttaatagaatagaagaactgg 17392510  T
Q  196 taaaaattagtaactataataaacaaacctttacaatggtaagagtttgaagtttgg 252  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  17392509 taaaaattagtaactataatgaacaaacctttgcaatgttaagagtttgaagtttgg 17392453  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 20112019 - 20111938
Alignment:
Q  216 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgc 297  Q
    |||||||||||||||||  |||| | ||||||||||||||| ||||| ||||||||||||||| |  |||||| ||||||||    
T  20112019 aaacaaacctttacaattttaagtgcttgaagtttgggacatttctggagcattttcactacctcaccccagtcatgaatgc 20111938  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 13712176 - 13712238
Alignment:
Q  216 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 278  Q
    |||||||||||||||||   |||||||||||||||||||||  | ||||||||||||||||||    
T  13712176 aaacaaacctttacaattcgaagagtttgaagtttgggacagctttgtagcattttcactacc 13712238  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 19653900 - 19653980
Alignment:
Q  216 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatg 296  Q
    ||||||||||||  |||  |||||| |||||||||||||||||  |||||||||||||  ||| | |||||||||||||||    
T  19653900 aaacaaacctttttaattttaagagcttgaagtttgggacaatattgtagcattttcataacctcttcccagttatgaatg 19653980  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 19806967 - 19806905
Alignment:
Q  216 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 278  Q
    ||||||||||||  ||| | ||||||||| |||||||||||||| || |||||||||||||||    
T  19806967 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacc 19806905  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 17380154 - 17380105
Alignment:
Q  67 tgttagatgagacgaaacacattctggaacatgatctggatattcccaat 116  Q
    |||||||||||| |||||||| ||| ||||||||| ||||||||||||||    
T  17380154 tgttagatgagatgaaacacaatctagaacatgatatggatattcccaat 17380105  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 1347935 - 1347995
Alignment:
Q  216 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcacta 276  Q
    ||||||||||||  |||||  |||||||||||||| ||||||||||  |||||||||||||    
T  1347935 aaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcacta 1347995  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 20112183 - 20112075
Alignment:
Q  66 ttgttagatgagacgaaacacattctggaacatgatctggatattcccaat---ctatggttgttgaattaatcgcctgtcgatccgagacaaaatagga 162  Q
    |||| ||| ||||| |||||||||| ||||||| || ||| |||| |||||   || | |||||||||| || | |||||| ||| || |||||||||||    
T  20112183 ttgtgagacgagacaaaacacattcaggaacatcatatgggtatttccaattctctttagttgttgaatcaaacccctgtcaatcggaaacaaaatagga 20112084  T
Q  163 tttgtaaaa 171  Q
    |||||||||    
T  20112083 tttgtaaaa 20112075  T

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Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 54 - 357
Target Start/End: Original strand, 26052801 - 26053110
Alignment:
Q  54 taacttcaaattttgttagatgagacgaaacacattctggaacatgatctggatattcccaat---ctatggttgttgaattaatcgcctgtcgatccga 150  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||   || |||||| ||||||    
T  26052801 taacttcaaattttgttagatgagatgaaacacattctggaacatgatctggatattcccaatgctctatggttgttgaatacttctcctgtcaatccga 26052900  T
Q  151 gacaaaataggatttgtaaaa-tactcaatagaagataaggacgggtaaaaatt--agtaactataataaacaaacctttacaatggtaagagtttgaag 247  Q
     |||||||||||||||||||| |||||||||||||| ||| || ||| ||| ||  |||||||||| ||||||||||||| |||||  |||||  |||||    
T  26052901 tacaaaataggatttgtaaaaatactcaatagaagagaagaactggtgaaatttttagtaactatattaaacaaacctttgcaatgtaaagagagtgaag 26053000  T
Q  248 tttgggacaattctgtagcattttcactaccacctcccagttatgaatgcatccgaaccaagttagttgaagttcccttaagttttcaagcacgggaagt 347  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||||| |    |||||  ||||| ||||||  |||||||||||| || ||||||     
T  26053001 tttgggacaattctgtagcattttcaccactacctcccagtcatgaatgccttgagaccaaaatagttcaagttcggttaagttttcaaacatgggaagg 26053100  T
Q  348 cttttctcaa 357  Q
    ||||| ||||    
T  26053101 cttttgtcaa 26053110  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 15784718 - 15784656
Alignment:
Q  216 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 278  Q
    ||||| |||||| ||||  |||||| ||||||||| |||||||||||||||||||||||||||    
T  15784718 aaacagaccttttcaattctaagagcttgaagttttggacaattctgtagcattttcactacc 15784656  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 40666 - 40602
Alignment:
Q  214 ataaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 278  Q
    ||||||||||||||  ||| | ||||||||||||||| ||||||||||| |||||||||| ||||    
T  40666 ataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacc 40602  T

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Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 40846 - 40809
Alignment:
Q  66 ttgttagatgagacgaaacacattctggaacatgatct 103  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  40846 ttgtaagatgagacgaaacacattcaggaacatgatct 40809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 34048 - 33992
Alignment:
Q  214 ataaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattt 270  Q
    ||||||||||||||  ||| | ||||||||||||||| ||||||| ||| |||||||    
T  34048 ataaacaaacctttttaatcgaaagagtttgaagtttcggacaatgctggagcattt 33992  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 24912923 - 24912861
Alignment:
Q  216 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 278  Q
    ||||||||||||  |||  | |||||||||||||||||||||| ||  |||||||||||||||    
T  24912923 aaacaaaccttttgaatttttagagtttgaagtttgggacaatcctaaagcattttcactacc 24912861  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 32226620 - 32226559
Alignment:
Q  217 aacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactacc 278  Q
    |||||||||||  ||| | |||||||||||||||||||||||  || ||||||| |||||||    
T  32226620 aacaaacctttgaaattggaagagtttgaagtttgggacaataatggagcatttgcactacc 32226559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 32242030 - 32242111
Alignment:
Q  217 aacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcactaccacctcccagttatgaatgca 298  Q
    |||||||||||| ||| | |||||||||||| ||||||||||  || ||||||| || |||| | | ||| |||||||||||    
T  32242030 aacaaacctttaaaattgaaagagtttgaaggttgggacaataatggagcatttgcagtacctcataccaattatgaatgca 32242111  T

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