View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_19 (Length: 324)
Name: NF7638_low_19
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 70 - 309
Target Start/End: Original strand, 33408861 - 33409096
Alignment:
| Q |
70 |
accttaatgatttatcgtgataaataattataacttcaatcgcgatggatgtgagaaaaaggtaaagagtgcaaaaatgcaacgatgaagacaataaaag |
169 |
Q |
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| T |
33408861 |
accttaatgatttatcgtgataa-taattacaacttcaatcgcgatggatgtgagaaaaaggtaaagagtgcaaaaatgcaacgatgaagacaataaaag |
33408959 |
T |
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| Q |
170 |
gggtgacaacaatgaatgtaaagtgtnnnnnnnntaagttctaaaatggcgattaagttttatgtggaaacgtagttcccaaaatcgagagctcatgata |
269 |
Q |
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| T |
33408960 |
aggtgacaacaatgaatgtgaagggtaaaacaaataagctccaaaatggcggttaag-tttatgcggaaac--agttcccaaaatcgagagcttatgata |
33409056 |
T |
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| Q |
270 |
ttatgtagataatatttctaatgtattttaaagttgtaat |
309 |
Q |
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| T |
33409057 |
tcatgtagataatatttctaatgtattttaaagttgtaat |
33409096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 33408799 - 33408845
Alignment:
| Q |
3 |
acagttgtgtaagtgagtttacgtggtgtttgtcattttttcaatag |
49 |
Q |
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| T |
33408799 |
acagttgtgtaagtgagtttacgtggtatttgtcattttgtcaatag |
33408845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 37835899 - 37835948
Alignment:
| Q |
257 |
agagctcatgatattatgtagataatatttctaatgtattttaaagttgt |
306 |
Q |
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| T |
37835899 |
agagttcatgatatcatgtagaaaatatttctgatatattttaaagttgt |
37835948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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