View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7638_low_2 (Length: 599)
Name: NF7638_low_2
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 21 - 599
Target Start/End: Complemental strand, 38466275 - 38465700
Alignment:
| Q |
21 |
aggggaatgcctaaaaaggttgtgggttgtgatgcatggcggttttgtaaggtacataccgttgatagtgaggatgagaaggtagaacttgctgctactg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38466275 |
aggggaatgcctaaaaaggttgtgggttgtgatgcatggcggttttgtaaggtacataccgttgatagtgaggatgagaaggtagaacttgctgctactg |
38466176 |
T |
|
| Q |
121 |
ccatggtgtttgtaaattgtaacgcaagtttagccagtgaaatcttatcctacgttagttagggtatgggcctatgatttatgggctgaaaaatggtgtt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38466175 |
ccatggtgtttgtaaattgtaacgcaagtttagccagtgaaatcttatcctacgttagttagggtatgggcctatgatttatgggctgaaaaatggtgtt |
38466076 |
T |
|
| Q |
221 |
tcagcctaagcccagagaaaaatcgcaaaaaggttgctattaatcaaaggtcatgagtttgaatcttgactcgagagactagtctctgcagttgtgtgca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38466075 |
tcagcctaagcccagagaaaaatcgcaaaaaggttgctattaatcaaaggtcatgagtttgaatctcgactcgagagactagtctctgcagttgtgtgca |
38465976 |
T |
|
| Q |
321 |
gagatactcagtacatacaaacaattataatatcttctgcatataatttttagattttacacaatatttatataatgcactatattattgcttgttgcta |
420 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38465975 |
gagatactcagttcatacaaaaaattataatatcttttgcatataatttttagattttacacaatatttatataatgcactatattattgcttgttgcta |
38465876 |
T |
|
| Q |
421 |
gttctgaatagtatagtattagaaccgcagcaacccacaaaaaggataattctatttgttaaataaaagaataaataaatattctattatccaaacaaaa |
520 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38465875 |
gttctgaatagtatagtattagaacc---gcaacccacaaaaaggataattctatttgttaaataaaagaataaataaatattctattatccaaacaaaa |
38465779 |
T |
|
| Q |
521 |
cgatagaacagaatatggaacatgaagtttgtgtgaatatgctattcatgcacttcttgtttcttatatgcctctctta |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38465778 |
tgatagaacagaatatggaacatgaagtttgtgtgaatatgctattcatgcacttattgtttcttatatgcctctctta |
38465700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University