View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_20 (Length: 321)
Name: NF7638_low_20
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 34086348 - 34086065
Alignment:
| Q |
13 |
aatatctttttgatgaagaaagtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggccagggccattatgcatcaattttctcaga |
112 |
Q |
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| T |
34086348 |
aatatctttttgatgaagaa-gtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggccagggccattatgcatcaattttctcaga |
34086250 |
T |
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| Q |
113 |
caacaaacaatttaaggatttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatccttcttatctagtcctcaaaccaaaggagtaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
34086249 |
caacaaacaatttaaggatttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatc---cttatctagtcctcaaaccaaaggggtaa |
34086153 |
T |
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| Q |
213 |
aatagagattgcaagtaaaattataccctcccttcgacgatatctgcgatgaatccacaaaatccctaaaagattgaaacaaacctac |
300 |
Q |
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| T |
34086152 |
aatagagattgcaagtaaaattataccctcccttcgacgataactgcgatgaatccacaaaatccctaaaagattgaaacaaacctac |
34086065 |
T |
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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 13818778 - 13818875
Alignment:
| Q |
13 |
aatatctttttgatgaagaaagtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggccagggccattatgcatcaattttctcag |
111 |
Q |
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|||| ||||||||||||||| | || |||||||||||| | ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
13818778 |
aatacctttttgatgaagaa-gccactggagataatgcataactatgaataaacggtcttgttgccaaggccagtgccattatgcatcaattttctcag |
13818875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 39077114 - 39076948
Alignment:
| Q |
131 |
tttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatccttcttatctagtcctcaaaccaaaggagtaaaatagagattgcaagtaa |
230 |
Q |
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||||| |||| ||| || |||||||||||| ||| |||||||||||||||||| || ||||||||||| || ||| ||| ||||||||| ||||| |
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| T |
39077114 |
ttttttcaatcacagatggaaacctgctccgctcaaatcacaaacacatcctt---atatagtcctcaaaacagaggggtagaatagagatattgagtaa |
39077018 |
T |
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| Q |
231 |
aattataccctcccttcgacgatatctgcgatgaatccacaaaatccctaaaagattgaaacaaacctac |
300 |
Q |
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||||| || || || | || || |||||||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
39077017 |
aattacacactaccctagaaaatttctgcgatgaatccaccaaatctttaaaagtttgaaacaaacctac |
39076948 |
T |
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