View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_23 (Length: 285)
Name: NF7638_low_23
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_23 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 34904628 - 34904900
Alignment:
| Q |
13 |
aatatcaactacaaccaacaattgtgtgtcaacttcggaactccttttctctatcacacttttnnnnnnncgtaaataatataaaacaaacgttatgatc |
112 |
Q |
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| T |
34904628 |
aatatcaactacaaccaacaattgtgtgtgaacttcggaactccttttctctatcacacttttaaaaaaacgtaaataatataaaacaaacgttataatc |
34904727 |
T |
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| Q |
113 |
tttcccaaacataaataatatagctctctcccacatctatgtttaaccaaaatcaatcattcatgtctattgaatcatgcaactgttgggtgcaccaaag |
212 |
Q |
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| T |
34904728 |
tttcccaaacataaataatatagctctctcccacatctatgtttaaccaaaatcaatcattcatgtctattgaatcatgcaactgttgggtgcaccaaag |
34904827 |
T |
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| Q |
213 |
gcagacgcaggggtgctagtagcaccaaatgcaggagtgcatgtcgaaccaaatgctggctgggatgaagcgc |
285 |
Q |
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| T |
34904828 |
gcagacgcaggggtgctagtagcaccaaatgcaggagtgcatgtcgaaccaaattctggctgggatgaagcgc |
34904900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 34896122 - 34896174
Alignment:
| Q |
219 |
gcaggggtgctagtagcaccaaatgcaggagtgcatgtcgaaccaaatgctgg |
271 |
Q |
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| T |
34896122 |
gcaggggtgctcgtagcaccaaatgcaggagttcctgtcgaaccaaatgctgg |
34896174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 34915983 - 34916019
Alignment:
| Q |
231 |
gtagcaccaaatgcaggagtgcatgtcgaaccaaatg |
267 |
Q |
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| T |
34915983 |
gtagcaccaaatgcaggagtgcctgtcgaaccaaatg |
34916019 |
T |
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