View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_24 (Length: 282)
Name: NF7638_low_24
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 22984494 - 22984755
Alignment:
| Q |
13 |
attcttcttcaaagtggatgatggaaaatggtgacattcctcatgttcttgctgttgacgacaatatcattgatcgcacacttgttgagaaacaccttaa |
112 |
Q |
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| T |
22984494 |
attcttcttcaaagtggatgatggaaaatggtgacattcctcatgttcttgctgttgacgacaatatcattgatcgcacacttgttgagaaacaccttaa |
22984593 |
T |
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| Q |
113 |
gaattcctcttgcaaaggtacgtacacctacctctcactcaaccattttatgttatattctttttt----------actaactacttttacattacacta |
202 |
Q |
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| T |
22984594 |
gaattcctcttgcaaaggtacgtacacctacctctcactcaaccattttatgttatattcttttttactttttcgaactaactacttttacattacacta |
22984693 |
T |
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| Q |
203 |
aagttacaactgctgaaaataggctgaaggcattggagtatagctttatgtgagcctttaat |
264 |
Q |
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| T |
22984694 |
aagttacaactgctgaaaataggctgaaggcattggagtatagctttatgtgagcctttaat |
22984755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 42884146 - 42883978
Alignment:
| Q |
9 |
gattattcttcttcaaagtggatgatggaaaatggtgacattcctcatgttcttgctgttgacgacaatatcattgatcgcacacttgttgagaaacacc |
108 |
Q |
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| T |
42884146 |
gattcttcttcttcaaagtgggtgatggaaaatggtgacattcctcatgttctggctgttgatgacaatatcattgatcgcacacttgttgagaaacttc |
42884047 |
T |
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| Q |
109 |
ttaagaattcctcttgcaaaggtacgtacacctacctctcactcaaccattttatgttatattcttttt |
177 |
Q |
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| T |
42884046 |
tgaagaattcctcttgcaaaggtacgtacacctacctctcactcaaccattttctgttatgttcttttt |
42883978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 42883829 - 42883782
Alignment:
| Q |
196 |
tacactaaagttacaactgctgaaaataggctgaaggcattggagtat |
243 |
Q |
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||||||| ||| ||||||||||||||| |||||||||||||||||||| |
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| T |
42883829 |
tacactacagtgacaactgctgaaaatgggctgaaggcattggagtat |
42883782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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