View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_27 (Length: 273)
Name: NF7638_low_27
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_27 |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 41412844 - 41412594
Alignment:
| Q |
1 |
gccaatcacaagccagttcttcaaccttccctacaaagtaaaatctccaaactgccattgaaatatgaagaaaaacacaccctttagcaaagaaactctg |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41412844 |
gccaatcacaagccagttcttcaaccttcgctacaaagtaaaatctccaaactgccattgaaatatgaagaaaaacacatcctttagcaaagaaactctg |
41412745 |
T |
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| Q |
101 |
aaactccatatccttaacacatgcaaccatgaacacaaggaacccaatagtgaacaacaataatccagagaaggaatctgatgtttgaatcaataactga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41412744 |
aaactccatatccttaacacatgcaaccatgaacacaaggaacccaatagtgaacaacaataatccagagaaggaatctgatgtttgaatcaataactga |
41412645 |
T |
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| Q |
201 |
tcatgtggtgttgacccttgtagctttattgctgtctttgttccatgtcct |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41412644 |
tcatgtggtgttgacccttgtagctttattgctgtctttgttccatgtcct |
41412594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 18523 - 18773
Alignment:
| Q |
1 |
gccaatcacaagccagttcttcaaccttccctacaaagtaaaatctccaaactgccattgaaatatgaagaaaaacacaccctttagcaaagaaactctg |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
18523 |
gccaatcacaagcaagttcttcaaccttccctacaaagtaaaatctccaaactgccattgaaatatgaagaaacacacaccctttagcaaagaaactttg |
18622 |
T |
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| Q |
101 |
aaactccatatccttaacacatgcaaccatgaacacaaggaacccaatagtgaacaacaataatccagagaaggaatctgatgtttgaatcaataactga |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18623 |
aaactccatatccttaacacaagcaaccatgaacacaagaaaccctattgtgaacaacaataatccagagaaggaatctgatgtttgaatcaataactga |
18722 |
T |
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| Q |
201 |
tcatgtggtgttgacccttgtagctttattgctgtctttgttccatgtcct |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18723 |
tcatgtggtgttgacccttgtagctttattgctgtctttgttccatgtcct |
18773 |
T |
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