View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_3 (Length: 552)
Name: NF7638_low_3
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Original strand, 39658672 - 39659189
Alignment:
| Q |
16 |
atgaactatcaaagctgaaaacagaaaacacactacattttaccaaagcaacagtgaaaaatcgaacctgaaaatcatctccatatttttcaactagacg |
115 |
Q |
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| T |
39658672 |
atgaactatcaaagctgaaaacagaaaacacactacattttaccaaagcaacagtgaaaaatcgaacctgaaaatcatctccatatttttcaactagacg |
39658771 |
T |
|
| Q |
116 |
actaatatgaagacgttgaattgaagtcaaaggttgaggaagtgaacttttaccatctcttctcctttttcccaacgcagatttcaaatctacaccatga |
215 |
Q |
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| T |
39658772 |
actaatatgaagacgttgaattgaagtcaaaggttgaggaagtgaacttttaccatctcttctccttttccccaacgcagatttcaaatctacaccatga |
39658871 |
T |
|
| Q |
216 |
aattatactcaaattattcacattccttcaaaattaccaatattaatactaatttcaacaaaatattaacaattcatgaattgatgagaacataccgtct |
315 |
Q |
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| T |
39658872 |
aatcatactcaaattattcacattccttcaaaattaccaatattaatactaatttcaacaaaatattaacaattcatgaattgatgagaatataccatct |
39658971 |
T |
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| Q |
316 |
tcttcgagatcgctaccgggatcattatcatcggcaacagatggaatttgaagagaatcagtaagggagttaggatcagaaacaacgccgaaagaggaat |
415 |
Q |
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| T |
39658972 |
tcttcgagatcgctaccgggatcattatcatcggcaacagatggaattttaagagaatcagtaagggagttaggatcagaaacaacgccgaaagaggaat |
39659071 |
T |
|
| Q |
416 |
agttttgggtgacggagcctttatcgtcccatttaggatcttctgcaagggattgtaacagtttgggaggaatagtgaaagcgggtttcagaactttagg |
515 |
Q |
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| T |
39659072 |
agttttgggtgacggagcctttatcgtcccatttaggatcttctgcaagggattgtaacagtttgggaggaatagtgaaagcgggtttcagaactttagg |
39659171 |
T |
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| Q |
516 |
attcttctttggaagacc |
533 |
Q |
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| T |
39659172 |
attcttctttggaagacc |
39659189 |
T |
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