View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_30 (Length: 267)
Name: NF7638_low_30
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 41497592 - 41497353
Alignment:
| Q |
10 |
aagaatatacggtacacgagtaactaatcctgaaattgtgttcttttatgtttatttttactatttcctttgtttcaaatccaattctcctatgtagtct |
109 |
Q |
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| T |
41497592 |
aagaaaatacggcacacgagtatctaatcctgaaattgtgttcttttatgtttatttttactatttcctttgtttcaaatccaattctcctatgtagtct |
41497493 |
T |
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| Q |
110 |
gaattagtgaatcctaatacagggccatagaagaagaaactccatttcctttctcatctgatatgatatatatgaggagctctagaacaaaaagtaatac |
209 |
Q |
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| T |
41497492 |
gaattagtgaatcctaatacagggccatagaagaagaaactccatttcctttctcatatgatatgatatatatgaggagctctagaacaaaaagtaatac |
41497393 |
T |
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| Q |
210 |
taaagagaagatgagaacctgcagtcctggaacaccgttg |
249 |
Q |
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| T |
41497392 |
taaagagaagatgagaacctgcagtcctggaacaccgttg |
41497353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 41491149 - 41491120
Alignment:
| Q |
220 |
atgagaacctgcagtcctggaacaccgttg |
249 |
Q |
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| T |
41491149 |
atgagaacctgcagtcctggaacaccgttg |
41491120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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