View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_32 (Length: 258)
Name: NF7638_low_32
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_32 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 48877119 - 48877358
Alignment:
| Q |
19 |
agcagagaagtttggctacactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatac |
118 |
Q |
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| T |
48877119 |
agcagagaagtttggctccactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatac |
48877218 |
T |
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| Q |
119 |
tgatgcattagagtttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgc |
218 |
Q |
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| T |
48877219 |
tgatgcattagagtttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgc |
48877318 |
T |
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| Q |
219 |
ggttggcagaaataccggaactggaactgtctttatgcaa |
258 |
Q |
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| T |
48877319 |
ggttggcagaaataccggaactggaattgtctttatgcaa |
48877358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 8380756 - 8380634
Alignment:
| Q |
76 |
tcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaactcaggg |
174 |
Q |
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| T |
8380756 |
tcttctacctcgggaaaattcggaccattcagttggagtataccgatgcaaaagagtctctcctgcaggctgctcgtaaagcaccagttgcagcacaggg |
8380657 |
T |
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| Q |
175 |
ttttcgaattcaatgtaacaagt |
197 |
Q |
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| T |
8380656 |
gtttcggattcagtgtaacaagt |
8380634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 53456132 - 53455968
Alignment:
| Q |
71 |
ttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaact |
169 |
Q |
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| T |
53456132 |
ttatctcttctacctcgggaaaatccggactattcaattggagtatacagatgcaaaagagtctctcctgcaagctgctcgtaaagctccagttgcagct |
53456033 |
T |
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| Q |
170 |
cagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaatacc |
234 |
Q |
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| T |
53456032 |
cggggttttcgaattcaatgtaacaagtgggctatcatagtgcgtttactgttgggagagatacc |
53455968 |
T |
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