View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7638_low_34 (Length: 257)

Name: NF7638_low_34
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7638_low_34
NF7638_low_34
[»] chr6 (15 HSPs)
chr6 (17-240)||(13942598-13942821)
chr6 (25-240)||(14016622-14016837)
chr6 (17-240)||(13471305-13471528)
chr6 (17-240)||(14086201-14086424)
chr6 (18-240)||(14112011-14112233)
chr6 (17-240)||(13891312-13891535)
chr6 (88-240)||(14026646-14026798)
chr6 (88-240)||(13861288-13861440)
chr6 (17-187)||(14048748-14048918)
chr6 (94-159)||(14086125-14086190)
chr6 (150-198)||(13873638-13873686)
chr6 (1-36)||(14016838-14016873)
chr6 (88-165)||(13942516-13942593)
chr6 (88-125)||(14111928-14111965)
chr6 (88-140)||(14016532-14016584)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 13942598 - 13942821
Alignment:
Q  17 cttagttctctcaattttggaagactacaggaaaaactatttgatgggagatccacaatttgattaccactaaggtgaagctcaacaagattagaactta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||| |||||||||||||||||||||||    
T  13942598 cttagttctctcaattttggaagactacaggaaaaactatttgatgggagatccaccatgtcattaacactaaggtcaagctcaacaagattagaactta 13942697  T
Q  117 tgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaagtggaaaagttgaacttggattgactcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13942698 tgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaagttgaaaagttgaacttggattgactcaa 13942797  T
Q  217 tgaatggataaaatgatcagaaag 240  Q
    ||||||||||||||||||||||||    
T  13942798 tgaatggataaaatgatcagaaag 13942821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 14016622 - 14016837
Alignment:
Q  25 tctcaattttggaagactacaggaaaaactatttgatgggagatccacaatttgattaccactaaggtgaagctcaacaagattagaacttatgtttgac 124  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  14016622 tctcatttttggaagactacaggaaatactatttgatgggagatccaccatttgattaccaataaggtcaagctcaacaagattagcacttatgtttgac 14016721  T
Q  125 acccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatgga 224  Q
    ||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14016722 acccaatggaatatcaaggatgatgcaaagttgttatcggagagatcaaggatagaaagagaagtggaaaagttgaacttggattgactcaatgaatgga 14016821  T
Q  225 taaaatgatcagaaag 240  Q
    ||||||||||||||||    
T  14016822 taaaatgatcagaaag 14016837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 13471528 - 13471305
Alignment:
Q  17 cttagttctctcaattttggaagactacaggaaaaactatttgatgggagatccacaatttgattaccactaaggtgaagctcaacaagattagaactta 116  Q
    ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||| |||||||    
T  13471528 cttagttctctcaattttggaagactacaagaaaaattatttgacgggagatccaccatttgattgccactaaggtcaagctcaacaagattggaactta 13471429  T
Q  117 tgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaagtggaaaagttgaacttggattgactcaa 216  Q
    |||||||||||   || |||||||| |||||  |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13471428 tgtttgacaccatatgaaatatcaatgatgacacaaatttgttccgagagagatcaaggatagaaagagaagtggaaaatttgaacttggattgactcaa 13471329  T
Q  217 tgaatggataaaatgatcagaaag 240  Q
     ||||||| |||||||||||||||    
T  13471328 ggaatggacaaaatgatcagaaag 13471305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 14086201 - 14086424
Alignment:
Q  17 cttagttctctcaattttggaagactacaggaaaaactatttgatgggagatccacaatttgattaccactaaggtgaagctcaacaagattagaactta 116  Q
    |||||||||||||||||||| || ||||| ||||||  |||||| |||||||| || || |||||||||||||||| ||||  ||||||||| |||||||    
T  14086201 cttagttctctcaattttggtagcctacaagaaaaatgatttgaagggagatctaccatctgattaccactaaggtcaagcaaaacaagattggaactta 14086300  T
Q  117 tgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaagtggaaaagttgaacttggattgactcaa 216  Q
    ||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  14086301 tgtttgacacccactggaatatcaaagatgaagcaaagctgttccaagagagatcgaggatagaaagagaagtggaaaagttgaacttggattgactcag 14086400  T
Q  217 tgaatggataaaatgatcagaaag 240  Q
     |||||||| ||||||| ||||||    
T  14086401 ggaatggatgaaatgataagaaag 14086424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 14112011 - 14112233
Alignment:
Q  18 ttagttctctcaattttggaagactacaggaaaaactatttgatgggagatccacaatttgattaccactaaggtgaagctcaacaagattagaacttat 117  Q
    |||||||||||||||||||||| ||   ||||||  ||||||||||||||||||| || ||||||  |||||||| ||||   |||||||| ||||||||    
T  14112011 ttagttctctcaattttggaagcctgtgggaaaatttatttgatgggagatccaccatctgattataactaaggtcaagccttacaagattggaacttat 14112110  T
Q  118 gtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaagtggaaaagttgaacttggattgactcaat 217  Q
    |||||||||||| |  |||||||| ||||| | ||||| |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  14112111 gtttgacacccactcaaatatcaaagatgacgtaaagtagttcaaagaaagatcaaggattgaaagagaattggaaaagttgaacttggattgactcaat 14112210  T
Q  218 gaatggataaaatgatcagaaag 240  Q
    |||||||||||||||||||||||    
T  14112211 gaatggataaaatgatcagaaag 14112233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 13891535 - 13891312
Alignment:
Q  17 cttagttctctcaattttggaagactacaggaaaaactatttgatgggagatccacaatttgattaccactaaggtgaagctcaacaagattagaactta 116  Q
    ||||||||||||||| ||||||| ||| ||||||||  ||||||||||| ||| || || ||||||  |||||||| ||||   |||||||| | ||| |    
T  13891535 cttagttctctcaatcttggaagcctataggaaaaatgatttgatgggaaatcaaccatatgattattactaaggtcaagccttacaagattgggactaa 13891436  T
Q  117 tgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaagtggaaaagttgaacttggattgactcaa 216  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||    
T  13891435 tgtttgacacccactggaatatcaaagatgatgcgaagttgttcgaagagagatcaaggatagaaagagatgtggaaaaattgaacttcgatttactcaa 13891336  T
Q  217 tgaatggataaaatgatcagaaag 240  Q
     |||||||||||||||||||||||    
T  13891335 agaatggataaaatgatcagaaag 13891312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 14026646 - 14026798
Alignment:
Q  88 aaggtgaagctcaacaagattagaacttatgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaa 187  Q
    ||||| |||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||   ||| ||||||||||||||||| |||    
T  14026646 aaggtcaagctttacaagattggaacttatgtttgacacccaatggaatatcaaggatgatgcaaagtggttatcagatagatcaaggatagaaagggaa 14026745  T
Q  188 gtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14026746 gtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaag 14026798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 13861440 - 13861288
Alignment:
Q  88 aaggtgaagctcaacaagattagaacttatgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaa 187  Q
    ||||| ||||||||||||||| |||||||||||||||| | |  ||||||||| ||||||  |||||||||||  |||||||||||||||||||||||||    
T  13861440 aaggtcaagctcaacaagattggaacttatgtttgacaacaacgggaatatcatggatgacacaaagttgttcacagagagatcaaggatagaaagagaa 13861341  T
Q  188 gtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaag 240  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13861340 ttggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaag 13861288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 14048748 - 14048918
Alignment:
Q  17 cttagttctctcaattttggaagactacaggaaaaactatttgatgggagatccacaatttgattaccactaaggtgaagctcaacaagattagaactta 116  Q
    ||||||||||||||||||||||| ||| | ||||||  ||||| ||||| |||| | || | ||||  |||||||| ||||   |||||||| | ||| |    
T  14048748 cttagttctctcaattttggaagcctataagaaaaatgatttggtgggacatccgccatcttattattactaaggtcaagcatcacaagattgggactaa 14048847  T
Q  117 tgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaa 187  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  14048848 tgtttgacacccaatggaatatcgaggatgacgcaaagttgttccaagagagatcaaggatagaaagagaa 14048918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 14086125 - 14086190
Alignment:
Q  94 aagctcaacaagattagaacttatgtttgacacccattggaatatcaaggatgatgcaaagttgtt 159  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||| | ||||||| ||||||||    
T  14086125 aagcttaacaagattggaacttatgtttgacaccaattggaatatcatgaatgatgcgaagttgtt 14086190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 13873686 - 13873638
Alignment:
Q  150 caaagttgttccaagagagatcaaggatagaaagagaagtggaaaagtt 198  Q
    |||||||||||| |||||| ||||||||||| |||||| ||||||||||    
T  13873686 caaagttgttccgagagaggtcaaggatagagagagaactggaaaagtt 13873638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14016838 - 14016873
Alignment:
Q  1 gccacaatctcttaaacttagttctctcaattttgg 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  14016838 gccacaatctcttaaacttagttctctcagttttgg 14016873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 13942516 - 13942593
Alignment:
Q  88 aaggtgaagctcaacaagattagaacttatgtttgacacccattggaatatcaaggatgatgcaaagttgttccaaga 165  Q
    ||||| ||||||||||||||| ||||||||||||||||   | |||| ||||| | ||||||  || |||||||||||    
T  13942516 aaggtcaagctcaacaagattggaacttatgtttgacaatgaatggagtatcatgaatgatgtgaacttgttccaaga 13942593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 14111928 - 14111965
Alignment:
Q  88 aaggtgaagctcaacaagattagaacttatgtttgaca 125  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  14111928 aaggtcaagctcaacaagattataacttatgtttgaca 14111965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 14016532 - 14016584
Alignment:
Q  88 aaggtgaagctcaacaagattagaacttatgtttgacacccattggaatatca 140  Q
    ||||| |||||||| |||||| ||||| |||||||||||||| || |||||||    
T  14016532 aaggtcaagctcaataagattggaactcatgtttgacacccactgaaatatca 14016584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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