View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_38 (Length: 250)
Name: NF7638_low_38
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 31 - 243
Target Start/End: Complemental strand, 2122855 - 2122650
Alignment:
| Q |
31 |
agtttaacaagtgtttttataccactagataaactcaaatgattgtttcattattannnnnnnaaaatgttaagaagctgtttcgctttttattacttgt |
130 |
Q |
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| T |
2122855 |
agtttaacaagggtttttataccagtagctaaactcaaatatttgtttcattattattttgttaaaatattaagaagttgtttcactttttattacctgt |
2122756 |
T |
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| Q |
131 |
aaattgtaatgattgtttaatttgtgtagatgatgtgaggaaggagattcaagatgaaaccgatagagagactggacgaacaagacagatttcaactgtt |
230 |
Q |
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| T |
2122755 |
aac-------gattgtttaatttgtgcaggtgatgtgaggaaggagattcaagatgaaaccgatagagagactggacgaacaagacagatttcaactgtt |
2122663 |
T |
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| Q |
231 |
cctattcttctca |
243 |
Q |
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||||||| ||||| |
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| T |
2122662 |
cctattcatctca |
2122650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 42037943 - 42038040
Alignment:
| Q |
139 |
atgattgtttaatttgtgtagatgatgtgaggaaggagattcaagatgaaaccgatagagagactggacgaacaagacagatttcaactgttcctattc |
237 |
Q |
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| T |
42037943 |
atgatggtttaatt-gtgtagctgcggtgaggaaggaaattcaagatgaaacggatagagaaaccggtcgatccaaacaaatatcaactgtccctattc |
42038040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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