View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_40 (Length: 241)
Name: NF7638_low_40
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 33648269 - 33648053
Alignment:
| Q |
4 |
ccaatcacttagactaaagttgtgaacggatacaaaatgtaaaagaag----tgtattttatgttcaagttgaaggacaactagtcccaacaacaacaga |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33648269 |
ccaatcacttagactaaagttgtgaacggatacaaaatgtaaaagaagaaagtgtactttatgttcaagttgaaggacaactagtcccaacaacaacaga |
33648170 |
T |
|
| Q |
100 |
agtaacttctcataaaaatccctcaaatcctcactatactcttactatttactattttgttttcaagtaaacaaacaaaaaacgttttactcacttttct |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33648169 |
agtaacttctcagaaaaatccctcaaatcctcactatactcttactatttactattttgttttcaagtaaacaaacaaaaaacgttttactcacttttct |
33648070 |
T |
|
| Q |
200 |
tccttactactactact |
216 |
Q |
| |
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||||||||||||||||| |
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| T |
33648069 |
tccttactactactact |
33648053 |
T |
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