View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_41 (Length: 239)
Name: NF7638_low_41
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 2123061 - 2123223
Alignment:
| Q |
1 |
aggaaggtgcagaaactctgcatactctctgcttccttcatcaatcttttgaagctgcaaaacaagaggcctccgtgtaacaatgcctgcnnnnnnnntt |
100 |
Q |
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| T |
2123061 |
aggaagatgcagaaactctgcatactctctatttccttcatcaatcttttgaagctgcaaaacaagaggcctccgtgtaacaatgcctacaaaacaattt |
2123160 |
T |
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| Q |
101 |
gcatgcaactcatcaaaatcaaaatgtttgtcaccacaatttgaaccgatcaacaccgattta |
163 |
Q |
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| T |
2123161 |
gcatgcaactcatcaacatcaaaatgtttgtcaacgcaatttgaaccaatcaacactgattta |
2123223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 2123277 - 2123307
Alignment:
| Q |
195 |
attacctgatccgcgaggtaagaaatctttg |
225 |
Q |
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| T |
2123277 |
attacctgatccgcgaggtaagaaatctttg |
2123307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 9957786 - 9957731
Alignment:
| Q |
35 |
ccttcatcaatcttttgaagctgcaaaacaagaggcctccgtgtaacaatgcctgc |
90 |
Q |
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| T |
9957786 |
ccttcatcaatcttgtgaagctgcaaaacaagaggacgtcgagtaacaatccctgc |
9957731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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