View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_44 (Length: 208)
Name: NF7638_low_44
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 29193292 - 29193104
Alignment:
| Q |
1 |
ccaatgacaactttt--atacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaatatttaaaggttccg |
98 |
Q |
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| T |
29193292 |
ccaatgacaacttttttatacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaatatttaaaggttccg |
29193193 |
T |
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| Q |
99 |
gctccttgtcatctttctggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagtgcaagtgc |
187 |
Q |
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| T |
29193192 |
gctccttgtcatctttcaggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagtgcaagtgc |
29193104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 29183064 - 29183020
Alignment:
| Q |
143 |
gaaaaaatcaacaagcaaagactatggttttataagtgcaagtgc |
187 |
Q |
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| T |
29183064 |
gaaaaaatcaacaagcaaagactatggttttataagtgcaagtgc |
29183020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 33632671 - 33632839
Alignment:
| Q |
12 |
ttttatacctgtaagagtgcttgtttgttgacataaattctgactgagacgaaatttctgaaccaaagtcaatatttaaaggttccggctccttgtcatc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
33632671 |
ttttatacctgtaagagtgcttgtttgttgacataaattctgactgagatgaaatttctgaaccaaagtcaatatttaaaggttctggctccttgttatc |
33632770 |
T |
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| Q |
112 |
tttctggatctcctgggaaggaacacaatcagaaaaaatcaacaagcaaagactatggttttataagtg |
180 |
Q |
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| T |
33632771 |
ttttaggatctcctgggaaggaacacaatcataaaaaatcaacaagcaaatactatggttttataagtg |
33632839 |
T |
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