View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_5 (Length: 484)
Name: NF7638_low_5
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Original strand, 41547118 - 41547571
Alignment:
| Q |
16 |
atgatatcaaaattaaacaagttcaatctagttagaggattactaaatatgaaatttaaatcaaatgtttttgcgaggcatatcaaaaagagaaacaaac |
115 |
Q |
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| T |
41547118 |
atgatatcaaaattaaacaagttcaatctagttagaggattactaaatatgaaatttaaatcaaatgtttttgcgaggcatgtcaaaaagagaaacaaac |
41547217 |
T |
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| Q |
116 |
atggacttcacattgtaaatgaccattggtagatgaacatatgggttaagcttcttttctacaaggatgattcatgcaccatgttcttcgtattctgcaa |
215 |
Q |
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| T |
41547218 |
atggacttcacattgtaaatgaccattggtagatgaacatatgggttaagcttctttactacaaggatgattcatgcaccatgttcttcgtattctgcaa |
41547317 |
T |
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| Q |
216 |
aaaagaaagtgtgtaaaatggaaaacatttttgtgtaacaacaatgcatggtgatcatggtgaagaattttaaaataaactctttgaacgtagttgagaa |
315 |
Q |
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| T |
41547318 |
aaaagaaagtgtgtaaaatggaaaacatttttgtgtaacaacaatgcatggtgatcatggtgaagaattttaaaataaactctttgaacgtagttgagaa |
41547417 |
T |
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| Q |
316 |
tagaatattattttttacataattttctttctcctgcaatgcctcaacaaattgtgttgtataaaggaaaactagatctttttaagagatgacaagaatc |
415 |
Q |
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| T |
41547418 |
tagaatattattttttacataattttctttctcctgcaatgcctcaacaaattgtgttgtataaaggaaaactagatctttttaagagatgacaagaatc |
41547517 |
T |
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| Q |
416 |
acgattcacgaaacaaattttgcatgttacttttgaacatagatgctaaatatt |
469 |
Q |
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| T |
41547518 |
acgattcacgaaacaaattttgcatgttacttttgaacatagatgctaaatatt |
41547571 |
T |
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