View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_6 (Length: 455)
Name: NF7638_low_6
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 77 - 443
Target Start/End: Complemental strand, 31667961 - 31667597
Alignment:
| Q |
77 |
tccctggatagtttagcgttcaaatttgtaagatttgtatttagagtagttgggttcattatttttagagcatatccgacagtagacaccatgagatgtt |
176 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31667961 |
tccctggatagtttaacgttcgaatttgtaagatttgtatttagagtagtcgggttcattatttttagagcatatccgacagtagacaccatgagatgtt |
31667862 |
T |
|
| Q |
177 |
tctaacttgagtaaaccaccatttgaatgttgtaaaatggcaatttagtcgttttaataaatattaacttcggggctaactgaaaataactactctatag |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31667861 |
tctaacttgagtaaaccaccatttgaatgttgtaaaatggcaatttagtcgttttaataaatattaacttcggggctaactgaaaataactactc--tag |
31667764 |
T |
|
| Q |
277 |
ctaattgatgagaaacctaattcgtctatatctaaacaaaacctcgcatcaaagttttggtaagcaacctaattggcctcggtggcatcagcatattgct |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31667763 |
ctaattgatgagaaacctaattcgtctatatctaaacaaaacctcgcatcaaagttttggtaagcaacctaattggcctcagtggcatcagcatattgct |
31667664 |
T |
|
| Q |
377 |
agatttattttttctctctcgatgcatagaagagggcagtcaagataataacaagtatttcattgat |
443 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31667663 |
agatttattttttctctcttgatgcatagaagagggcattcaagataataacaagtatttcattgat |
31667597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 77 - 443
Target Start/End: Complemental strand, 31685015 - 31684651
Alignment:
| Q |
77 |
tccctggatagtttagcgttcaaatttgtaagatttgtatttagagtagttgggttcattatttttagagcatatccgacagtagacaccatgagatgtt |
176 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31685015 |
tccctggatagtttaacgttcgaatttgtaagatttgtatttagagtagtaaggttcattatttttagagcatatccgacagtagacaccatgagatgtt |
31684916 |
T |
|
| Q |
177 |
tctaacttgagtaaaccaccatttgaatgttgtaaaatggcaatttagtcgttttaataaatattaacttcggggctaactgaaaataactactctatag |
276 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31684915 |
tctaacttgagtaaaccaccatttgaatgttgtaaaatggcaatttagtcgttttaataaatattaacttcggggctaactgaaaataactactc--tag |
31684818 |
T |
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| Q |
277 |
ctaattgatgagaaacctaattcgtctatatctaaacaaaacctcgcatcaaagttttggtaagcaacctaattggcctcggtggcatcagcatattgct |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31684817 |
ctaattgatgagaaacctaattcgtctatatctaaacaaaacatcgcatcaaagttttggtaagcaacctaattggcctcggtggcatcagcatattgct |
31684718 |
T |
|
| Q |
377 |
agatttattttttctctctcgatgcatagaagagggcagtcaagataataacaagtatttcattgat |
443 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
31684717 |
agatttattttttctctctagatgcataaaagagggcattcaagataataacaagtatttcattgat |
31684651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 31668043 - 31667984
Alignment:
| Q |
19 |
cagttgtccataaccataaatcatccagcaggttcccacaatatttttatgatgtatatc |
78 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31668043 |
cagttgtccataaccataaatcatccagcaggttcccacaatatttttatgatgtatatc |
31667984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 31685097 - 31685038
Alignment:
| Q |
19 |
cagttgtccataaccataaatcatccagcaggttcccacaatatttttatgatgtatatc |
78 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31685097 |
cagttgtccataaccataaatcatccagcaggttcccacaatatttttatgatgtatatc |
31685038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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