View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_7 (Length: 454)
Name: NF7638_low_7
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 41990456 - 41990897
Alignment:
| Q |
1 |
ctaagtgcaaaatatgctggcccaagtgacaattatgtaggtctaagcaatgttgtgaaaatcgagattctacctagaatcgggaggggtttgaaagtct |
100 |
Q |
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| T |
41990456 |
ctaagtgcaaaatatgcaggcccaagtgacaattatgtaggtctaagcaatgttgtgaaaatcgagattctacctagaatcgggaggggtttcaaagtct |
41990555 |
T |
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| Q |
101 |
tattgtgtgaaaaatgaaatccgtggnnnnnnntcgtctctttttaggtttttatgttcaagttttgttcaccattaagaaactcattcctgtttgttct |
200 |
Q |
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| T |
41990556 |
tattgtgtgaaaaatgaaaccggtggaaaaaaatcgtctctttttaggtttttatgttcaagttttgttcaccattaagaaactcattcctgtttgttct |
41990655 |
T |
|
| Q |
201 |
atctcacatgttgttcttaattcttgcttttggattcataacaggcaactattttgtcagcatggatgtagcacattgctatttagaaggtaatgcagat |
300 |
Q |
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| T |
41990656 |
atctcacatgttgttcttaattcttgcttttggactcataacaggcaactattttgtcagcatggatgtagcacattgctatttagaaggtaatgcagat |
41990755 |
T |
|
| Q |
301 |
gctgtggagttttgtccacatgataggcaccacaatgttttagctgcatccacttacacactacaagaaggtgatcaacccagtagatctggaagcattt |
400 |
Q |
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| T |
41990756 |
gctgtggagttttgtccacatgataggcaccacaatgttttagctgcatccacttacacactacaagaaggtgatcaacccagtagatctggaagcattt |
41990855 |
T |
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| Q |
401 |
cactctttaatattgatgcggacacaggcaagtttgacacag |
442 |
Q |
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| T |
41990856 |
cactctttaatattgatgcggacacaggcaagtttgacacag |
41990897 |
T |
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Back To:
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 28931705 - 28931660
Alignment:
| Q |
44 |
taagcaatgttgtgaaaatcgagattctacctagaatcgggagggg |
89 |
Q |
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| T |
28931705 |
taagcgatgttgtgaaaattgagattcaacctaggatcgggagggg |
28931660 |
T |
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