View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7638_low_9 (Length: 440)
Name: NF7638_low_9
Description: NF7638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7638_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 30346441 - 30346014
Alignment:
| Q |
1 |
acttgcattgcttggaatcccaattttggttctaaatttccttcccaattcagcatcttctccaaactcatcctcatcaaccccattaacaatcacatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346441 |
acttgcattgcttggaatcccaattttggttctaaatttccttcccaattcagcatcttctccaaactcatcctcatcaaccccattaacaatcacatgc |
30346342 |
T |
|
| Q |
101 |
actcttcttgtaggaatttgatagaaatctcttagcatctcaccacagctatcactaatagcaacatgatgagcataactcttaaagaatcttatctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346341 |
actcttcttgtaggaatttgatagaaatctcttagcatctcaccacagctatcactaatagcaacatgatgagcataactcttaaagaatcttatctcat |
30346242 |
T |
|
| Q |
201 |
tcagaaccttaggaacaattccctgcaagctattgttgaaaagaggtgaaataggttcatcaggtcttctagctaaatcctgaaaaatacttgattgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346241 |
tcagaaccttaggaacaattccctgcaagctattgttgaaaagaggtgaaataggttcatcaggtcttctagctaaatcctgaaaaatacttgattgcaa |
30346142 |
T |
|
| Q |
301 |
actctcaagtgctattccatgccaagacactacaagatttgaaagattcctagctacataatgaggaagtgcaacactttctgaatgaataacatcaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30346141 |
actctcaagtgctattccatgccaagacactacaagatttgaaagattcctagctacataatgaggaagtgcaacactttctgaatgaataacatcaaat |
30346042 |
T |
|
| Q |
401 |
ggttctttcttgttctcttcctgatatt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
30346041 |
ggttctttcttgttctcttcctgatatt |
30346014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 10841205 - 10841418
Alignment:
| Q |
5 |
gcattgcttggaatcccaattttggttctaaatttccttcccaattcagcatcttctccaaactcatcctcatcaaccccattaacaatcacatgcactc |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||| |||||||||||||||| ||| || ||||| ||||| ||||| | ||||||||| |||| |
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| T |
10841205 |
gcattacttggaatcccaattttggttctaaactcttttcctaattcagcatcttctctaaaatcttcctcgtcaacaccattgagaatcacatgaactc |
10841304 |
T |
|
| Q |
105 |
ttcttgtaggaatttgatagaaatctcttagcatctcaccacagctatcactaatagcaacatgatgagcataactcttaaagaatcttatctcattcag |
204 |
Q |
| |
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|||| | |||||||| || | |||||||| |||||||||||| ||||||||||||||||||||||||| ||| | || ||||||||||||||||| || |
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| T |
10841305 |
ttctacttggaatttggtaaacatctcttaacatctcaccacaactatcactaatagcaacatgatgagaatatttgttgaagaatcttatctcatttag |
10841404 |
T |
|
| Q |
205 |
aaccttaggaacaa |
218 |
Q |
| |
|
|||||||||||||| |
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| T |
10841405 |
aaccttaggaacaa |
10841418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 404
Target Start/End: Original strand, 10841481 - 10841604
Alignment:
| Q |
281 |
tgaaaaatacttgattgcaaactctcaagtgctattccatgccaagacactacaagatttgaaagattcctagctacataatgaggaagtgcaacacttt |
380 |
Q |
| |
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|||||||| || |||||||| || || | |||||| |||||||| || || |||||||||| ||||| | || | ||||||||||||| ||||||| |
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| T |
10841481 |
tgaaaaatgctcgattgcaagctttccaatgctatgccatgccaggatacaacaagatttggaagatcttttgcaagccaatgaggaagtgctacacttt |
10841580 |
T |
|
| Q |
381 |
ctgaatgaataacatcaaatggtt |
404 |
Q |
| |
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||||||||| ||||||||| |||| |
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|
| T |
10841581 |
ctgaatgaacaacatcaaaaggtt |
10841604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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