View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7639_high_3 (Length: 468)
Name: NF7639_high_3
Description: NF7639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7639_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 218 - 463
Target Start/End: Original strand, 34262285 - 34262532
Alignment:
| Q |
218 |
tattggcttatggtagtattgtacagatccattaatggaatgcacaatat--agaacttaaaatgtatcattattaaccatacttgacaagaaaaaagta |
315 |
Q |
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| T |
34262285 |
tattggcttatggtagtattgtacagatccattaatggaatgcacaatatatagaacttaaaatgtatcattattaaccatacttgacaagaaaaaagta |
34262384 |
T |
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| Q |
316 |
cattgattgaacactactaaatttaaccaagnnnnnnnnnnnctacaaccttagaactaattggtttgaatgaaaatgaacgcctcttacaagaaaacat |
415 |
Q |
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| T |
34262385 |
cattgattgaacactactaaatttaaccaagaaaaaaaaaaactacaaccttagaactaattggtttgaatgaaaatgaacgcctcttacaagaaaacat |
34262484 |
T |
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| Q |
416 |
tttatgttttttcttgattcatggtatcacatagagctatttctttct |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34262485 |
tttatgttttttcttgattcatggtatcacatagagctatttctttct |
34262532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 27218501 - 27218382
Alignment:
| Q |
18 |
aatcatgcatgtttgtagattccaggtccccttcctaaaggagaaataatagaacaccaggagaaaattggtctttggggaataacaccaccttcagcag |
117 |
Q |
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| T |
27218501 |
aatcatacatgtttgtagattccaggtccccttcctaaagaacaaatattagaacacaagaagaaaattggcctttggggaataacactaccttcagcaa |
27218402 |
T |
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| Q |
118 |
atgctaccgttgttgaaaaa |
137 |
Q |
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| T |
27218401 |
atgcaaccgttgttggaaaa |
27218382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 27211525 - 27211403
Alignment:
| Q |
18 |
aatcatgcatgtttgtagattccaggtccccttcctaaaggagaaataatagaacaccaggagaaaattggtctttggggaataacaccaccttcagcag |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||||| |||||| ||||||||| ||||||||||| |
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| T |
27211525 |
aatcatacatgtttgtagattccaggtccccttcctaaagaacaaataatagaacaagagaagaaaattggcctttggagaataacactaccttcagcag |
27211426 |
T |
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| Q |
118 |
atgctaccgttgttgaaaaaact |
140 |
Q |
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|||| || ||||||| ||||||| |
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| T |
27211425 |
atgcaactgttgttggaaaaact |
27211403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 251 - 463
Target Start/End: Original strand, 37576264 - 37576473
Alignment:
| Q |
251 |
aatggaatgcacaatatagaacttaaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaaccaagnnnn |
350 |
Q |
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| T |
37576264 |
aatggaatgcacaacatagaacataaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacacta---aatttaaccaagaaaa |
37576360 |
T |
|
| Q |
351 |
nnnnnnnctacaaccttagaactaattggtttgaatgaaaatgaac-gcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatag |
449 |
Q |
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| T |
37576361 |
aaaataactacaacctt-gaactaattggtttgaatgaaaatgaactgcctcttacaagaaaacattttatgttttttcttgattcatggtatcacatag |
37576459 |
T |
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| Q |
450 |
agctatttctttct |
463 |
Q |
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| T |
37576460 |
agctatttctttct |
37576473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 37579428 - 37579291
Alignment:
| Q |
7 |
caatgttaatgaatcatgcatgtttgtagattccaggtccccttcctaaaggagaaataatagaacaccaggagaaaattggtctttggggaataacacc |
106 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
37579428 |
caattttaacgaatcatgcatgtttgtagattccaggtccccttcctaaaggagaaataatagaacgccagaagaaaattggtctttggggaataacact |
37579329 |
T |
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| Q |
107 |
accttcagcagatgctaccgttgttgaaaaaacttttt |
144 |
Q |
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||||||||||||||| |||||||||| |||||| |||| |
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| T |
37579328 |
accttcagcagatgcaaccgttgttggaaaaacatttt |
37579291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 37578621 - 37578558
Alignment:
| Q |
151 |
ctattttctgtttacattttgtaaggatatactgtagttgtaacaatatttgttctgtttgaac |
214 |
Q |
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| T |
37578621 |
ctattttttgtttacgttttgtaaggaaatactgtagttgtaacattatttgttatgcttgaac |
37578558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 37602181 - 37602245
Alignment:
| Q |
274 |
taaaatgtatcattattaaccatacttgacaagaaaaaagtacattgattgaacactactaaatttaac |
342 |
Q |
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||||||||||||||||||||| ||||| ||||| |||||||| ||| ||||||||||||||||||||| |
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| T |
37602181 |
taaaatgtatcattattaaccctactt-acaag-aaaaagtatatt--ttgaacactactaaatttaac |
37602245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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