View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7639_high_6 (Length: 414)
Name: NF7639_high_6
Description: NF7639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7639_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 4936696 - 4937095
Alignment:
| Q |
20 |
ttcggttcattaaacctgattatccatttctcccaaagatttatagactattctcatgcttcaaaacttctatatggccttgtatttctagcaatctctt |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4936696 |
ttcggttcattaaacctgattatctatttctcccaaagatttataggctattctcatgcttcaaaacttctatatggccttgtatttctagcaatctctt |
4936795 |
T |
|
| Q |
120 |
tgtctttcaacaaagtgatttcataatatttttcctttaaatacaccaaggctagattaggcttttaaattccagaaaagaaatggattatgaaatgttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4936796 |
tgtctttcaacaaagtgatttcataatatttttcctttaaatacaccaaggctagattaggcttttaaattccagaaaagaaatggattatgaaatgttt |
4936895 |
T |
|
| Q |
220 |
ctcgtatgacaactttcatcatcctaag------aggggattactcactcatcataaggacgagtttcctaataaaataaaagtttaattacagttttag |
313 |
Q |
| |
|
||| |||||| | |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
4936896 |
ctcatatgactaatttcatcatcgtaagacaattaggggattactcactcatcataaggatgagtttcctaataaaataaaggtttaattacagttttgg |
4936995 |
T |
|
| Q |
314 |
ccccctnnnnnnntaactacttttaag-cctctatgtttacccccttttacagttttggccccca-accaattttaaacgttcaaaattcgaacatcgac |
411 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||||| |||||||||||||||||| || ||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
4936996 |
ccccct-aaaaaataactacttttgagccctctatgtttaccctcttttacagttttggccctcagaccaattttgaacgtctaaaattcgaacttcgac |
4937094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 10971629 - 10971546
Alignment:
| Q |
51 |
cccaaagatttatagactattctcatgcttcaaaacttctatatggccttgtatttctagcaatctctttgtctttcaacaaag |
134 |
Q |
| |
|
||||||||| | ||||||||||||||| || || |||| ||| | ||||| || |||||||||| || |||||||||||||||| |
|
|
| T |
10971629 |
cccaaagatctttagactattctcatgtttaaagacttttatctagccttataattctagcaatatccttgtctttcaacaaag |
10971546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University